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Archive for the ‘Immune System’ Category

Pure Sense

Thursday, August 4th, 2016

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About Voluntary HIV Counselling & Testing | Office for …

Thursday, August 4th, 2016

Who should get tested?

If you are sexually active or thinking of becoming sexually active you should get tested.

Stellenbosch University Campus Health Service Weekdays: 08:00 - 12:00 021 808 3496

HIV/AIDS Helpline 0800 012 322

If you would like to give us feedback on your experience of these services or recommend services in other areas contact Monica du Toit.

VCT is about getting to know your HIV status by taking an HIV test, and does not test for Aids. This confidential test will tell you whether you are HIV positive or negative. Voluntary means that the decision to go for the test is entirely your own choice. Confidential means that you have the right to absolute privacy.

VCT is a three-step process that involves pre-test counselling, the test and post-test counselling.

The pre-test counselling will prepare you for the test and will help you to anticipate the result whether it turns out to be HIV positive or negative.

A trained counsellor will explore your reason for attending and explain shared confidentiality. The counsellor will explain to you what HIV is, explore your level of risk of having the virus, correct any misconceptions you may have and explain what the HIV test is. The counsellor will also explain the importance and the benefits of knowing your HIV status. In addition, he/she will discuss the different options available to you and give you an opportunity to ask any questions you may have about HIV or the HIV test. You will be encouraged to talk freely about your fears and concerns. You then give informed consent/dissent freely.

There are three common types of HIV antibody tests: the Elisa test, the Western blot test and the Rapid test. The Elisa and Western blot test will require that you have a sample of blood taken. This blood sample will be sent to a laboratory for testing and the results will be received a week later. The Rapid test requires that the health worker take a drop of your blood by pricking your finger. A drop of this blood will be placed on the test kit where a chemical agent will be added. Your results will be available within 15 minutes. If the test is positive, a second Rapid test will be done to confirm the result.

Current HIV antibody tests can only detect the antibodies when sufficient quantities have been produced. With new technology the time it takes before antibodies can be detected is decreasing, but there is still a period during which the antibodies cannot be detected in the blood. This is called the window period and can last up to 42 days. During the window period, you may receive a negative HIV test result, but still have the virus in your body. It is recommended that if you have had unsafe sex in the past six weeks, you should have a second HIV test done six weeks later to confirm the result of a negative first test.

All these tests are highly reliable and accurate.

During the post-test counselling phase you will be given the results of your test simply and clearly. The counsellor will allow time for the results to sink in and to check your understanding. There are a number of basic issues that the counsellor can help you with, which includes dealing with your immediate emotional reactions, checking if you have immediate support available and identifying your options and/or resources.

A positive test result means that you have been infected with HIV. The counsellor will help you work through some of your feelings of shock, fear and anger. You will have the opportunity to talk about whether or not you are going to tell your family and your sexual partner. The counsellor will also discuss healthy and positive living with you.

Being HIV positive does not mean that you have no future. Many people live happy, healthy and productive lives with HIV. But it does mean that you will have to learn about keeping your immune system healthy, lowering stress levels and building up a good support system. It is also important that you protect yourself and your partner from further infection. You will also be given information about your rights as someone living with HIV. Your counsellor will refer you to further supportive counselling and medical help whenever you need it.

The counsellor will explore with you the various ways of keeping yourself and your sexual partner(s) safe from contracting HIV. He/she will help you understand the window period and the possibility of needing to be retested. Even if you tested negative, your counsellor will share with you the importance of taking responsibility for avoiding future risky behaviour and of using condoms. If you and your partner have come together for the test and one of you is HIV positive, you may need support as to how this affects your relationship.

As a student at a higher education institution, you are in the high-risk age group of HIV. It is very important that you know your HIV status. Deciding whether or not to go for an HIV test is a difficult decision. While some people think that it is better not to know their status, there are many advantages to knowing your status. With this knowledge you can take control of your life and your future.

You will be very relieved that you do not have HIV. You can begin to make sure that you practice safer sex and use a condom every time you have sex.

If you have had unprotected sex (sex without a condom) recently, the virus might not yet show up in the test. This is called the window period. The counsellor will ask you to come back after six weeks for another test.

This means that you have been infected with HIV. Knowing that you are HIV positive will help you to make informed lifestyle decisions. You can start to take care of your stress levels, eat a more balanced and healthy diet and live a healthier life. Knowing your HIV status will prolong your life. The earlier you are diagnosed the better!

HIV doesnt kill; opportunistic infections do. HIV attacks your bodys immune system so that you are at risk of getting a variety of infections. If you are HIV positive and know your status, you can become aware of the symptoms of the various infections and make sure that you get treatment as early as possible.

You can make sure that you do not get re-infected with a different strain of HIV, by using a condom every time you have sex. You can also make sure that you protect your sexual partner(s) from becoming HIV positive.

Knowing that you are HIV positive will allow you to plan for the future for your own health and well-being, as well as that of your family and partner.

Although there are many benefits to knowing your HIV status, there could also be negative consequences. In many families and communities it is difficult to disclose your status because of stigma and discrimination. Before you have a VCT, you need to talk to a counsellor and discuss all the possible outcomes of being tested. This will allow you to make an informed decision. Nobody can force you to have a test. It is also entirely up to you whether or not you disclose your status to anyone else. The advantages of knowing your status greatly outweigh the disadvantages. Deciding not to go for a test does not mean that you do not have the HI-virus.

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Andrew Tucker elevated to top despite disease | SA News

Thursday, August 4th, 2016

Pretoria- Basic Education Minister Angie Motshekga has highly praised the 2015 National Senior Certificate (NSC) examinations overall top achiever, Andrew Tucker, for his "never-say-die" attitude.

Speaking onWednesday at the launch of the Matric Second Chance Support Programme held in Johannesburg, the Minister described tucker as one learner whose story is a blueprint of achieving greater heights Against All Odds.

Tucker is an epitome of the "never-say-die" attitude, she said.

Tucker, a learner at South African College High School in Cape Town, was diagnosed with the Guillain-Bare Syndrome (GBS) disease in February 2015.

The GBS is a disorder in which the bodys immune system attacks parts of the peripheral nervous system. It is a particularly debilitating disease, which can be fatal. There is no known cure for the disease nor does anyone know the actual cause of the disorder.

Andrew's School Principal informed me that the poor Andrew was hospitalised and bedridden for almost five months in 2015. He only returned to school, full time, only in the 3rd term (July), said the Minister, narrating Tuckers sad story with a happy ending.

However, upon his return to school, Andrew refused to be treated differently. Instead, he showed courage and determination, thus inspiring the entire school community to push the boundaries of expectation and strive for excellence.

I am glad to repeat it here that Andrew is our Top Achiever for the Class of 2015. What an inspiring story! What a beautiful mind! What an achievement! Thank you Andrew for what you have done for the basic education sector.

We wish you strength and best for your bright future. We are proud of you achievement. We glow in your light. Youre indeed a beacon of hope, said the Minister.

Tucker also came first place in category top achiever in quintile 5 schools on Tuesday when the nations top achievers received awards.

He said he wants to dedicate his life to making a difference in the lives of others by studying Medicine at University of Cape Town.

He said he was grateful for the support he received from his school, the headmaster, staff who rallied behind him with invaluable support and encouragement throughout the year.-SAnews.gov.za

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Immune system – Simple English Wikipedia, the free …

Thursday, August 4th, 2016

The immune system is the set of tissues which work together to resist infections. The immune mechanisms help an organism identify a pathogen, and neutralize its threat.[1]

The immune system can detect and identify many different kinds of disease agents. Examples are viruses, bacteria and parasites. The immune system can detect a difference between the body's own healthy cells or tissues, and 'foreign' cells. Detecting an unhealthy intruder is complicated, because intruders can evolve and adapt so that the immune system will no longer detect them.

Once a foreign cell or protein is detected, the immune system creates antibodies to fight the intruders, and sends special cells ('phagocytes') to eat them up.

Even simple unicellular organisms such as bacteria possess enzyme systems that protect against viral infections. Other basic immune mechanisms appeared in ancient life forms and remain in their modern descendants, such as plants and insects. These mechanisms include antimicrobial peptides (called defensins), phagocytosis, and the complement system. These are the innate immune system, which defends the host from infections in a non-specific way.[2] The simplest innate system is the cell wall or barrier on the outside to stop intruders getting in. For example, skin stops most outside bacteria getting in.

Vertebrates, including humans, have much more sophisticated defense mechanisms. Whereas the innate immune system is found in all metazoa, the adaptive immune system is only found in vertebrates. It is thought to have arisen in the first jawed vertebrates.[3]

The adaptive immune response gives the vertebrate immune system the ability to recognize and remember specific pathogens. The system mounts stronger attacks each time the pathogen is encountered. It is adaptive immunity because the body's immune system prepares itself for future challenges.

The typical vertebrate immune system consists of many types of proteins, cells, organs, and tissues that interact in a complex and ever-changing network. This acquired immunity creates a kind of "immunological memory".

The process of acquired immunity is the basis of vaccination. Primary response can take 2 days to 2 weeks to develop. After the body gains immunity towards a certain pathogen, if infection by that pathogen occurs again, the immune response is called the secondary response.

In some organisms, the immune system has its own problems within itself, called disorders. These result in other diseases, including autoimmune diseases, inflammatory diseases and possibly even cancer.[4][5]Immunodeficiency diseases occur when the immune system is less active than normal. Immunodeficiency can either be the result of a genetic (inherited) disease, or an infection, such as the acquired immune deficiency syndrome (AIDS), that is caused by the retrovirus HIV, or other causes.

In contrast, autoimmune diseases result from an immune system that attacks normal tissues as if they were foreign organisms. Common autoimmune diseases include Hashimoto's thyroiditis, rheumatoid arthritis, Type 1 diabetes, and Lupus erythematosus.

Immunology is the study of all aspects of the immune system. It is very important to health and diseases.

Immunology is scientific part of medicine that studies the causes of immunity to disease. For many centuries people have noticed that those who recover from some infectious diseases do not get that illness a second time.[6]

In the 18th century, Pierre Louis Maupertuis made experiments with scorpion venom and saw that certain dogs and mice were immune to this venom.[7] This and other observations of acquired immunity led to Louis Pasteur (18221895) developing vaccination and the germ theory of disease.[8] Pasteur's theory was in direct opposition to contemporary theories of disease, such as the miasma theory. It was not until the proofs Robert Koch (18431910) published in 1891 (for which he was awarded a Nobel Prize in 1905) that microorganisms were confirmed as the cause of infectious disease.[9] Viruses were confirmed as human pathogens in 1901, when the yellow fever virus was discovered by Walter Reed (18511902).[10]

Immunology made a great advance towards the end of the 19th century, through rapid developments, in the study of humoral immunity[11] and cellular immunity.[12] Particularly important was the work of Paul Ehrlich (18541915), who proposed the side-chain theory to explain the specificity of the antigen-antibody reaction. The Nobel Prize for 1908 was jointly awarded to Ehrlich and the founder of cellular immunology, Ilya Mechnikov (18451916).[13]

The immune system is extremely ancient, and may go back to single-celled eukaryotes which needed to distinguish between what was food and what was part of themselves.[14]

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Your immune system – Mayo Clinic

Thursday, August 4th, 2016

Your immune system is responsible for helping to eliminate invaders (antigens) such as infectious organisms. The key cells in your immune system are lymphocytes known as B cells and T cells, which originate in your bone marrow. After T cells further develop in your thymus, all of your immune system cells gather in your lymph nodes and spleen. Antigens (triangular shapes above) are ingested (1), partially digested (2) and then presented to helper T cells by special cells called macrophages (3). This process activates the helper T cell to release hormones (lymphokines) that help B cells develop (4). These hormones, along with recognition of further antigens (5), change the B cell into an antibody-producing plasma cell (6). The antibodies (Y shapes above) produced can be one of several types (IgG, IgM, IgA, IgE and IgD) (7). The antibody "fits" the antigen much like a lock fits a key. The antigen is thus rendered harmless. The helper T cells also aid in development of cytotoxic T cells (8), which can kill antigens directly; memory T cells are produced (9) so that re-exposure to the same antigen will provide a more rapid and effective response (10).

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Immune System

Thursday, August 4th, 2016

immunesystem.com is dedicated as an information resource about the immune system.

With stress increasing steadily in our lives, our immune systems can become overwhelmed and unable to cope with so many diseases, staff infections, viruses, and bacteria. This can leads us to using more pharmaceutical products, which can save your life and/or further deteriorate your immune system.

How does one best boost the immune system naturally? What pharmaceuticals are best against which specific diseases?

At the moment, there is an ebola crisis that is threatening Africa. How does we protect ourselves from these oncoming epidemics and outbreaks?

Our goal here is to share information about the immune system and increasing the strength of the organism, and thus staying healthy in the face of an onslaught of pathogens.

An immune system is a synthesis of biological processes within any kind of organism that defends against disease by recognizing and killing pathogens and tumour cells. It detects a wide variety of pathogens, from bacteria to viruses, and distinguishes these pathogens from the organism's own healthy cells and tissues in order to function properly. Identification is not easily done, as pathogens can evolve quickly, producing mutations that avoid the immune system and allow the pathogens to successfully infect their hosts.

Malfunctions of the immune system can cause autoimmune and inflammatory diseases and cancer.[ Deficiency of the immune system occurs when the immune system is lethargic, with the potentional of serious infections spreading throughout the body. Immunodeficiency in humans can occur because of genetic diseases, such as severe combined immunodeficiency, environmentally acquired conditions like HIV/AIDS, or the overuse of certain immunosuppressive medications. Conversely, autoimmunity can be caused from a hyperactive immune system destroying normal tissues as if they were foreign pathogens organisms.

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Immunotherapy: Using the Immune System to Treat Cancer …

Thursday, August 4th, 2016

Scanning electron micrograph of a human T lymphocyte (also called a T cell) from the immune system of a healthy donor. Source: National Institute of Allergy and Infectious Diseases (NIAID).

The immune systems natural capacity to detect and destroy abnormal cells may prevent the development of many cancers. However, cancer cells are sometimes able to avoid detection and destruction by the immune system. Cancer cells may:

In the past few years, the rapidly advancing field of cancer immunology has produced several new methods of treating cancer, called immunotherapies, that increase the strength of immune responses against tumors. Immunotherapies either stimulate the activities of specific components of the immune system or counteract signals produced by cancer cells that suppress immune responses.

These advances in cancer immunotherapy are the result of long-term investments in basic research on the immune systemresearch that continues today. Additional research is currently under way to:

Why is immunotherapy such a hot area of cancer research today? In this short excerpt from the documentary, Cancer: The Emperor of All Maladies, PBS, Dr. Steven A. Rosenberg of the National Cancer Institutes Center for Cancer Research discusses his work in immunotherapy and its promise for cancer patients.

One immunotherapy approach is to block the ability of certain proteins, called immune checkpoint proteins, to limit the strength and duration of immune responses. These proteins normally keep immune responses in check by preventing overly intense responses that might damage normal cells as well as abnormal cells. But, researchers have learned that tumors can commandeer these proteins and use them to suppress immune responses.

Blocking the activity of immune checkpoint proteins releases the "brakes" on the immune system, increasing its ability to destroy cancer cells. Several immune checkpoint inhibitors have been approved by the Food and Drug Administration (FDA). The first such drug to receive approval, ipilimumab (Yervoy), for the treatment of advanced melanoma, blocks the activity of a checkpoint protein known as CTLA4, which is expressed on the surface of activated immune cells called cytotoxic T lymphocytes. CTLA4 acts as a "switch" to inactivate these T cells, thereby reducing the strength of immune responses; ipilimumab binds to CTLA4 and prevents it from sending its inhibitory signal.

Two other FDA-approved checkpoint inhibitors, nivolumab (Opdivo) and pembrolizumab (Keytruda), work in a similar way, but they target a different checkpoint protein on activated T cells known as PD-1. Nivolumab is approved to treat some patients with advanced melanoma or advanced lung cancer, and pembrolizumab is approved to treat some patients with advanced melanoma.

Researchers have also developed checkpoint inhibitors that disrupt the interaction of PD-1 and proteins on the surface of tumor cells known as PD-L1 and PD-L2. Agents that target other checkpoint proteins are also being developed, and additional research is aimed at understanding why checkpoint inhibitors are effective in some patients but not in others and identifying ways to expand the use of checkpoint inhibitors to other cancer types.

Progress is also being made with an experimental form of immunotherapy called adoptive cell transfer (ACT). In several small clinical trials testing ACT, some patients with very advanced cancerprimarily blood cancershave had their disease completely eradicated. In some cases, these treatment responses have lasted for years.

In one form of ACT, T cells that have infiltrated a patients tumor, called tumor-infiltrating lymphocytes (TILs), are collected from samples of the tumor. TILs that show the greatest recognition of the patient's tumor cells in laboratory tests are selected, and large populations of these cells are grown in the laboratory. The cells are then activated by treatment with immune system signaling proteins called cytokines and infused into the patients bloodstream.

The idea behind this approach is that the TILs have already shown the ability to target tumor cells, but there may not be enough of them within the tumor microenvironment to eradicate the tumor or overcome the immune suppressive signals that are being released there. Introducing massive amounts of activated TILs can help to overcome these barriers and shrink or destroy tumors.

Another form of ACT that is being actively studied is CAR T-cell therapy. In this treatment approach, a patients T cells are collected from the blood and genetically modified to express a protein known as a chimeric antigen receptor, or CAR. Next, the modified cells are grown in the laboratory to produce large populations of the cells, which are then infused into the patient.

CARs are modified forms of a protein called a T-cell receptor, which is expressed on the surface of T cells. These receptors allow the modified T cells to attach to specific proteins on the surface of cancer cells. Once bound to the cancer cells, the modified T cells become activated and attack the cancer cells.

Therapeutic antibodies are antibodies made in the laboratory that are designed to cause the destruction of cancer cells.

One class of therapeutic antibodies, called antibodydrug conjugates (ADCs), has proven to be particularly effective, with several ADCs having been approved by the FDA for the treatment of different cancers.

ADCs are created by chemically linking antibodies, or fragments of antibodies, to a toxic substance. The antibody portion of the ADC allows it to bind to a target molecule that is expressed on the surface of cancer cells. The toxic substance can be a poison, such as a bacterial toxin; a small-molecule drug; or a radioactive compound. Once an ADC binds to a cancer cell, it is taken up by the cell and the toxic substance kills the cell.

The FDA has approved several ADCs for the treatment of patients with cancer, including:

Other therapeutic antibodies do not carry toxic payloads. Some of these antibodies cause cancer cells to commit suicide (apoptosis) when they bind to them. In other cases, antibody binding to cancer cells is recognized by certain immune cells or proteins known collectively as "complement," which are produced by immune cells, and these cells and proteins mediate cancer cell death (via antibody-dependent cell-mediated cytotoxicity or complement-dependent cytotoxicity, respectively). Sometimes all three mechanisms of inducing cancer cell death can be involved.

One example of this type of therapeutic antibody is rituximab (Rituxan), which targets a protein on the surface of B lymphocytes called CD20. Rituximab has become a mainstay in the treatment of some B-cell lymphomas and B-cell chronic lymphocytic leukemia. When CD20-expressing cells become coated with rituximab, the drug kills the cells by inducing apoptosis, as well as by antibody-dependent cell-mediated cytotoxicity and complement-dependent cytotoxicity.

Other therapies combine non-antibody immune system molecules and cancer-killing agents. For example, denileukin diftitox (ONTAK), which is approved for the treatment of cutaneous T-cell lymphoma, consists of the cytokine interleukin-2 (IL-2) attached to a toxin produced by the bacterium Corynebacterium diphtheria, which causes diphtheria. Some leukemia and lymphoma cells express receptors for IL-2 on their surface. Denileukin diftitox uses its IL-2 portion to target these cancer cells and the diphtheria toxin to kill them.

The use of cancer treatment (or therapeutic) vaccines is another approach to immunotherapy. These vaccines are usually made from a patients own tumor cells or from substances produced by tumor cells. They are designed to treat cancers that have already developed by strengthening the bodys natural defenses against the cancer.

In 2010, the FDA approved the first cancer treatment vaccine, sipuleucel-T (Provenge), for use in some men with metastatic prostate cancer. Other therapeutic vaccines are being tested in clinical trials to treat a range of cancers, including brain, breast, and lung cancer.

Yet another type of immunotherapy uses proteins that normally help regulate, or modulate, immune system activity to enhance the bodys immune response against cancer. These proteins include cytokines and certain growth factors. Two types of cytokines are used to treat patients with cancer: interleukins and interferons.

Immune-modulating agents may work through different mechanisms. One type of interferon, for example, enhances a patients immune response to cancer cells by activating certain white blood cells, such as natural killer cells and dendritic cells. Recent advances in understanding how cytokines stimulate immune cells could enable the development of more effective immunotherapies and combinations of these agents.

Immunotherapy research at NCI is done across the institute and spans the continuum from basic scientific research to clinical research applications.

The Center of Excellence in Immunology (CEI) brings together researchers from across NCI and other NIH institutes to foster the discovery, development, and delivery of immunotherapy approaches to prevent and treat cancer and cancer-associated viral diseases.

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Boost Your Immune System? Science-Based Medicine

Thursday, August 4th, 2016

Posted by Mark Crislip on September 25, 2009

My right bicep. Oily, a little sticky, and otherwise completely unlike your immune system.

This post is a wee bit of a cheat in that it is a rewrite of a Quackcast, but I have three lectures and board certification in the near future, so sometimes you have to cook the wolf.

What does that mean: boost the immune system? Most people apparently think that the immune system is like a muscle, and by working it, giving it supplements and vitamins, the immune system will become stronger. Bigger. More impressive, bulging like Mr. Universes bicep. Thats the body part I am thinking about. What they are boosting is vague, on par with chi/qi or innate intelligence. They never really say what is being boosted.

The other popular phrase is support. A product supports prostate health, or breast health or supports the immune system. It sounds like the immune system is sagging against gravity due to age and needs a lift.

The immune system, if you are otherwise healthy, cannot be boosted, and doing those things you learned in kindergarten health (reasonable diet, exercise and sleep), will provide the immune system all the boosting or support it needs.

Someone is going to write in and say Americans have a lousy diet and dont exercise and can benefit from better food and exercise. And thats true. If you are not taking care of yourself, your immune function can be improved to function better. But if you are at your optimal baseline, you cannot make your immune function better.

What is the immune system? The immune system is a mind boggling complex set of coordinated cells and proteins.

There are antibodies: IgG, IgA, IgM, IgE and IgM, further divided into 5 subtypes of IgG and 2 of IgA, each with a different affinity for different parts of pathogens.

There is complement, a series of proteins that can be activated by two separate pathways and are important in killing some kinds of bacteria and attracting white cells to infection.

There are blood components: Polymorphonuclear leukocytes, also known as white cells. And monocytes. And eosinophils and macrophages. And the lymphocytes oh my, of which there are multiple types and with different functions. Each cell line can have either a specific task or a general task in the attempt to prevent you from dying from infection. If you are infected by a virus, there is one response, a bacterium produces a different response, a parasite, yet another response, and within each response there are subsets of types of response depending on the pathogen and whether or not you have been exposed to the infectious agent in the past.

There are all the proteins and their receptors that regulate the response to infection: chemokines and interferons and interleukins, a hodgepodge of letters and numbers: IL6 and TNF and CCR5 and on and on and on.

There is the Toll system, a wing of the immune system so ancient it is found in plants.

And there all the nonspecific parts of immunity that help prevent infection: platelets and cilia that sweep potential pathogens out and iron metabolism that keeps iron away from bacteria and the list goes on and on and on. The above is the briefest of overviews of the constituents of the immune system. It is almost like saying you have described the works of Shakespeare by noting it contains the words the, and, of, verily, and forsooth. But the purpose of this post is not to describe the immune system in detail as I would soon embarrass myself.

So when something allegedly boosts the immune system, I have to ask what part. How? What is it strengthening/boosting/supporting? Antibodies? Complement? White cells? Are the results from test tubes (often meaningless), animal studies, or human studies? And if in human studies, what was the study population? Are the results even meaningful? Or small, barely statistically significant, outcomes in poorly-done studies?

The answer, as we shall see, is usually nothing. It is the usual making a Mt. Everest out of a molehill, and a small molehill at that. If you google the phrase boost the immune system you will find over 288,000 pages that give advice on how to give that old immune system a lift. Curiously, a Pubmed search with the same phase yields 1,100 references, most concerning vaccination. If you Pubmed enhanced immune system you get 41,000 references mostly concerning immunology. None of the references concern taking a normal person and making the immune system work better than its baseline to prevent or treat infection. I have yet to see a quality clinical study that demonstrates that, in normal, not nutritionally- or otherwise-compromised people, that some intervention can lead to a meaningful increase in immune function and as a result have fewer infections. Maybe such a study exists. I cant find it. Send me the reference. I suppose the comment section will soon flood me with examples.

If you are normal and in good health, there is nothing you can do to make your baseline better.

Randomly reading some of the advice on boosting the immune system yields Dr. Phil-level inanities that are trivial yet true. Get a good nights sleep. Duh. Exercise regularly. Double duh. Avoid being a fat ass couch potato American whose idea of exercise is driving to Burger King for a triple Whopper with extra-large fries. What a concept. Dont smoke or drink. These sites often intermix common, well-known beneficial lifestyle changes with all sorts of nonsense.

By the way, I need a lifestyle. Best as I can tell, I just have a life. I live it, and someday I wont. But I need style. That is the problem of being from Portland: no style. Its the old joke: whats the difference between yogurt and Portland, Oregon? Yogurt has culture. Sigh.

There are numerous quack nostrums that allegedly boost your immune system. Exactly what is boosted and how is a mystery. Perhaps you are filled with toxins, then any number of detoxification regimens can improve your immune function. How precisely? Another mystery.

All the classic quack interventions: chiropractic, homeopathy, acupuncture, can also boost your immune system by, you know, changing some energy vibration or unblocking something or other. In fact one of the amazing things is that as best I can tell, there is no quack practice that someone, somewhere, will not say boosts your immune system.

People who receive regular chiropractic adjustments have immune system competency that is 200% greater than those who dont.

Homeopathic remedies stimulate the immune system to assist the body in repairing any imbalances that may have occurred.

The following acupressure points are effective for dealing with a condition that may be caused by a weak immune system. Elegant Mansion (K 27) reinforces immune system functioning by strengthening the respiratory system. Steady, firm pressure on the Sea Of Vitality points (B 23 and B 47) fortifies the immune system, rejuvenates the internal organs, and relieves pain associated with lower back problems. The Sea of Energy (CV 6) tones the abdominal muscles and intestines, and helps fortify the immune, urinary, and reproductive systems. Firm pressure on the Three Mile Point (St 36) immediately boosts the immune system with renewed energy. It helps tone and strengthen the major muscle groups, providing greater endurance. Bigger Stream (K 3) on the inside of the ankle helps balance the kidney meridian and strengthen the immune system. Bigger Rushing (Lv 3) and Crooked Pond (LI 11),ire important points for relieving pain and strengthening the immune system. The Outer Gate point (TW 5) helps to balance the immune system and strengthen the whole body. Hoku (LI 4) is a famous decongestant and anti-inflammatory point; it relieves arthritic pain and strengthens the immune system Last, and most important of all, the Sea of Tranquility (CV 17) governs the bodys resistance to illness and decreases anxiety by regulating the thymus gland. Each of these important points benefits the immune system by enabling the internal organs to function at optimal levels.

I suspect that if one were to do all these interventions as once, your immune system would be raised to such a high level of activation that you would probably spontaneously combust. You heard it here first: the reason for spontaneous combustion is multiple, simultaneous boostings of the immune system.

This kind of nonsense is successful in part because that we all are aware that chance of illness increases with the number of stressors in your life, and the worse your life or lifestyle, the worse you are likely to feel and the more likely you are to have an illness. This phenomenon is real for groups of people. The more stressors, the higher the likelihood something will bad will happen with your life. This effect is harder to quantify for an individual. If you dont sleep well, eat poorly, dont exercise, get a divorce and a parent dies, in the next year you are more likely to have a medical problem. I remember toting up my stress score in medical school and based on my number I should have been dead three months earlier.

I would bet that when people turn to these quack nostrums, they do feel better, but not because of the nostrums, but because, for however short a period of time, they are no longer participating in the less than optimal habits that define standard American diet and activity. What they are probably doing is getting back towards a baseline of optimal health, not improving their health past what it is capable of.

I would bet 6 million years of evolution have more or less tuned our immune system to be running optimally, as long as we do the basics of eating well, exercising etc. All the stuff we failed to learn in kindergarten. You can be deficient in vitamins or sleep, etc., which will make you prone to illness, but if you are at baseline, you cant improve your immune system in any meaningful way.

When reading the literature on the immune boosting properties of various products you find there are several kinds of results that they use to justify their claims, all with a thick coating of exaggeration and hyperbole.

The first is just made up. Somebody somewhere decided that this product enhanced immune function. Often the claim is based on ancient wisdom. You know, ancient wisdom, the same ancient wisdom that gave us the flat Earth and slavery and women as inferior, that ancient wisdom. Always a reliable indicator. Most of the time there is no data to support the claims of immune boosting.

Then there are test tube tests for boosting immune system,

The immune system is always looking to distinguish between self and not self. All the cells of your body are labeled with proteins, the major histocompatabilty complex for those of you keeping score, that are, in part, signals to the immune system. This protein on my cell surface identifies me as me to me. And no I am not preparing to sing opera. It tells the immune system, dont shoot, Im one of you. Other peoples tissue dont have the same labels. Bacteria and other pathogens not only lack these signals, they have constituents in their cells that the body has evolved very specific responses against.

For example, E. coli has a toxin, called lipopolysaccaride in its cell walls that the body very specifically recognizes with a wing of the immune system, called the Toll-like receptor. If you incubate immune cells in a test tube with chemicals or non-self life (bacteria, virus, etc.) the cells react. That is what they are supposed to do. In medicine we call it the inflammatory response.

Oh look: Virus. Fungus. New chemical. Is it part of us? Nope. Respond. Kill kill kill. Here is a point I have made in the past. If you take a cell from the immune system and expose it to some chemicals or bacteria, you activate it, you get an inflammatory response. Its primed. And if you then challenge that activated cell with another pathogen, it will kill that pathogen better than if the cell was not primed. It only works with some pathogens, usually those that are killed by nonspecific cell-medicated immunity.

Listeria and Candida are always popular pathogens that the immune system responds with a nonspecific (i.e. cellular) rather than a specific (i.e. humoral or antibody) response, probably because they are unusual enough pathogens that it made no sense evolutionarily to develop a specific response like we see to more common pathogens.

Some organisms, often unusual ones, are killed with a nonspecific response of the immune system, whereas others, such as viruss, which are killed by very specific antibody, or meningococcus, which really needs complement for optimal killing. This response is used to suggest that the immune system is being boosted and they imply that this boosting is to your benefit. Other test tube studies may show that mediators of inflammation, such as TNF or Il-1 are increased, which is what one would expect if you expose the immune system to a pathogen or a probiotic organism.

Those who say that that their product, for example probiotics, boost the immune system, point to studies such as these that show that in response to bacteria, cells of the immune system are activated, they are exhibiting the expected inflammatory response to a foreign invader. They call it boosting. I call it the inflammatory response. What could be better than priming your immune system so that it is better able to respond to a pathogen? This preamble leads us to the meat of this post: Is it good to have the immune system activated? Is it good to have your immune system primed? Or boosted? Maybe not. It does explain why taking a probiotic helps increase the antibody response to influenza vaccine in the elderly and decreases the duration of respiratory infections. A short term inflammatory response may be of benefit, but it may not be an effect you want to have persist.

But here is some recent, interesting literature, about the effects of having an inflammatory response to acute and chronic infections. Chronic inflammation of all types is associated with atherosclerosis i.e. hardening of the arteries, nicely reviewed in Libby et al.s Circulation article, Inflammation and Atherosclerosis from 2002. An inflammatory state can occur from many things, not just infections.

First up: the NEJM, Treatment of periodontitis and endothelial function from 2007.

Periodontitis is gum infection and endothelial cells are them what line the arteries of the body. So they took a 120 people in England with bad periodontal disease (insert your own English dentition joke here, I dont stoop to those kind of cheap shots) to either aggressive treatment of their disease or standard treatment. Aggressive treatment consisted of scenes from the movie Marathon Man:

Patients in the intensive-treatment group underwent the adjunctive full-mouth intensive removal of subgingival dental plaque biofilms with the use of scaling and root planing after the administration of local anesthesia; teeth that could not be saved were extracted, and microspheres of minocycline were delivered locally into the periodontal pocket.

What they looked at in this study, however, were markers of inflammation and endothelial function. Initially, when they were really reefing and scraping the teeth, which is going to cause bacteremia and bleeding, the aggressively treated group had a big spike in signs of inflammation, but long term, as their gums healed, they had a decrease markers of inflammation and better measured arterial flow. Those in the standard group did not get the same long term response; they continued to have signs of inflammation and endothelial cell activation. And this means?

Chronic exposure to bacteria leads to an inflammatory state and has detrimental effects on arteries. Taking lots of probiotics, or other substances that cause an inflammatory response, or boosting the immune system in the parlance of the quacks, should act like chronic periodontitis with chronic sustained signs of inflammation.

Who cares?

Maybe you, if you are taking immune boosters that could really activate the immune system; that should lead to chronic inflammation, which is associated with hardening of the arteries.

But wait. Theres more. The inflammatory state is a prothombotic state. Infected people make blood clots, and they can make these clots for a long time. Clots can manifest in several common ways: heart attacks, strokes, and pulmonary emboli (i.e. blood clot to the lung). There are now several studies out there demonstrate an epidemiological link between a recent infection and a thrombotic event. For example, from Risk of deep vein thrombosis and pulmonary embolism after acute infection in a community setting, Lancet, 2006:

7278 deep vein thrombosis patients and 3755 pulmonary embolism patients who were registered in a UK general practice database from 1987 to 2004. In the 2 weeks after a urinary tract infection, the risks of deep vein thrombosis and pulmonary embolism increased by 2.1-fold each, the report indicates. It took longer than 1 year for these elevated risks to return to baseline values.

Urinary tract infections increase your risk of blood clots and pulmonary embolism for up to a year.

How about heart attacks? Well, in Clinical Infectious Diseases 2007; 45:158-65 they looked at acute myocardial infarction and acute pneumococcal pneumonia and found an association, which had been noted since early last century. Acute pneumonia leads to heart attack.

Stroke? In European Heart Journal they looked at a database of strokes and heart attacks and found that:

There was strong evidence of an increased risk of both events in the seven days following infection for MI, the adjusted odds ratio (OR) was 2.10, and for stroke, the OR was 1.92. The risk was highest in the three days following infection (OR 3.75 for MI and 4.07 for stroke). The risk of events was reduced over time, so there was little excess risk beyond one month after infection.

And a simple community-acquired pneumonia decreases 5 year life expectancy in a VA population from 84 months to 34 months:

Although the cause of the decreased long-term survival is not yet clear, it may be that the systemic inflammatory response produced by CAP accelerates the natural course of medical comorbidities such as atherosclerosis, Dr. Peyrani suggested. This hypothesis, she said, is bolstered by a recent study that showed reduced long-term survival in CAP+ patients who were clinically cured but had increased interleukin 6 and interleukin 10 levels at the time of hospital discharge.

So chronic inflammation and acute inflammation both increase your risk of thrombosis and vascular events. What would probiotics and immune boosters do if they really worked? They would cause acute and chronic inflammation. For those who may think I am talking about vaccines, not here. Vaccines cause the development of a specific antibody against whatever you are immunizing against, but it does not cause a generalized inflammatory response.

Now I am well aware that association is not causality, and I am also well aware of the issues with epidemiological data to prove causality. But I submit for your consideration that if some product is really boosting your immune system, it is really activating your inflammatory response, and perhaps it may not be such a good idea.

Whenever I listen to skeptics talk about ID, they always complain how ID cannot make any predictions. Now I have been practicing ID for 23 years, and it is a science and I can make predictions. To suggest that ID is somehow inferior is. Huh? What? ID is intelligent design? Not infectious diseases? Oh. Thats different. Never mind.

But I will make a prediction: people who use probiotics or other substances that can measurably lead to an inflammatory response, or, have their immune system boosted, will have more strokes, heart attacks and pulmonary embolisms. So when you read that some product or other boosts the immune system, ask:

If the answer to number three is a big yes, perhaps you should avoid the product. When it comes to your immune system, if you are normal, leaving good enough alone is probably the way to go.

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Immune system | Better Health Channel

Thursday, August 4th, 2016

The immune system also produces proteins called antibodies that can help neutralise infection or the toxins that some germs produce.

Some infections, like influenza and the common cold, have to be fought many times, because so many different viruses can cause these illnesses. Catching a cold from one virus does not give you immunity against the others.

The immunisations you may need are decided by your health, age, lifestyle and occupation. Together, these factors are referred to as HALO.

HALO is defined as:

This page has been produced in consultation with and approved by: Australasian Society of Clinical Immunology and Allergy (ASCIA)

Last updated: March 2015

Content on this website is provided for education and information purposes only. Information about a therapy, service, product or treatment does not imply endorsement and is not intended to replace advice from your doctor or other registered health professional. Content has been prepared for Victorian residents and wider Australian audiences, and was accurate at the time of publication. Readers should note that, over time, currency and completeness of the information may change. All users are urged to always seek advice from a registered health care professional for diagnosis and answers to their medical questions.

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Immune system | Better Health Channel

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The Immune System – University of Illinois at Chicago

Thursday, August 4th, 2016

There are physical, chemical, and cellular defenses against invasion by viruses, bacteria, and other agents of disease.

During the early stages of an infection, there is an inflammatory response

During later stages, leucocytes produce immune responses

The first two lines of defense are called Innate Immunity

The last line of defense is called Acquired Immunity

Animation - the First Two Lines of Defense

Types of cells involved in the immune system:

Each type of virus, bacteria, or other foreign body has molecular markers which make it unique

Thus, immunological specificity and memory involve three events:

(1) Recognition of a specific invader

(2) Repeated cell divisions that form huge lymphocyte populations

(3) Differentiation into subpopulations of effector and memory cells

Antigen-presenting cell - a macrophage which digests a foreign cell, but leaves the antigens intact. It then binds these antigens to MHC molecules on its cell membrane. The antigen-MHC complexes are noticed by certain lymphocytes (recognition) which promotes cell division (repeated cell divisions)

T cells (Helper T cells and Cytotoxic T cells)

Cell-mediated immune response

B cells, Plasma Cells, and Antibodies

Antibody-mediated immune response

Summary of the Immune Response

The Clonal-Selection Theory

Scientific evidence showed early researchers:

To explain these patterns, researched developed the clonal-selection theory, whihc made several key claims about how the adaptive immune system works:

Edward Jenner (1749-1823)

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Immune System Boosters: Winning the Battle with Your …

Thursday, August 4th, 2016

[Below is my transcript of my video about winning the battle with your immune system, along with supplemental information on immune system boosters.]

Today, Im going to share with you how to win the battle for your immune system and really create a strong immune system and boost your immune system naturally with probiotics.

One of the biggest keys in doing so is getting more probiotics benefits and foods in your diet and improving your digestive health. In fact, theres new research showing that a condition called leaky gut is a major cause of food sensitivities, autoimmune disease, and immune imbalance or a weakened immune system in the body, and again, the key is really increasing probiotics. There are really two main steps here in the immune system boosters probiotics offer.

Stay away from the toxicity of tap water that contains fluoride and chlorine. Be careful of taking prescription antibiotic medications. Thats the leading cause of probiotics getting wipe out today.

Then also be careful about not consuming too much sugar. Consuming too much sugar can cause bad bacteria to feed, which actually imbalances the good and bad bacteria in your body. Sugar can even cause cancer.

Probiotics are good bacteria that help you digest nutrients that help detoxify your colon and that help balance out and support your immune system within your body. So the next step is consuming more probiotic foods and taking a quality probiotic supplement.

The probiotic foods you should look to consume are things like:

Getting some of those probiotic foods will absolutely help your immune system and then so will taking a quality probiotic supplement that contains live or living probiotics. Getting a better brand will help you with those.

Again, if you want to take your immune system to the next level, start staying away from the things that kill probiotics. Load up your diet with probiotics. If you do so, youre going to take your immune system and function to the next level.

There are numerous different recipes that are great immune system boosters and theyre delicious, too! Check out some of my favorite immune-boosting recipes.

Immune-Boosting Juice Recipe

Total Time: 5 minutes Serves: 2

INGREDIENTS:

DIRECTIONS:

Immune-Boosting Smoothie Recipe

Total Time: 5 minutes

Serves: 1

INGREDIENTS:

DIRECTIONS:

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What Is the Function of the Immune System? | Med-Health.net

Thursday, August 4th, 2016

The immune system is composed of specialized cells, various proteins, tissue and organs. The immune system works to defend us against hordes of microorganisms and germs that we are exposed to every day. In majority of the cases, the immune system performs and excellent job of preventing diseases and infections and keep us healthy. However, in some cases, problems can occur in the immune system, which can lead to occurrence of numerous illnesses and diseases.

The bodys defense against various microorganisms that cause disease and illness is the immune system. The immune system attacks these disease causing organisms through a sequence of steps referred to as the immune response.

The immune system is composed of a number of cells, tissues and organs that work in association and attacks the disease causing microorganisms and protect the human body. The cells of the immune system are the leukocytes or the white blood cells. They are of two main types that work in combination and destroy organisms and substances that invade the body.

Leukocytes are manufactured and stored in multiple organs of the body such as the spleen, bone marrow and the thymus gland. Hence, these organs are referred to as the lymphoid organs. Clumps of lymphoid tissues are also present throughout the body in the form of lymph nodes that contain the leukocytes.

The circulation of the leukocytes in the body takes place between the lymph nodes and the various organs through the blood vessels and lymphatic vessels. Hence, the functioning of the immune system occurs in a coordinated manner, thereby, monitoring the body against disease causing germs and microorganisms.

Leukocytes are divided into two main types as: phagocytes and lymphocytes.

When foreign particles or antigens invade the body, the various types of immune system cells work in combination to recognize and destroy them. The B lymphocytes are triggered in the process producing antibodies, which are specialized proteins that block specific antigens.

Once these antibodies are produced, they remain in the body and if the same antigen invades the body again, they are already present to block the antigen. Hence, if a person gets a specific disease, that person will not get sick with that disease again. This is the principle used behind immunizations used to prevent diseases.

After an antigen is locked by an antibody, the T cells come into action and destroy the antigens tagged by a particular antibody. T cells are therefore, sometimes referred to as killer cells.

Antibodies can also help in neutralizing toxins secreted by the microorganisms. They also help in activating a specialized group of proteins referred to as complement that helps in destroying viruses, bacteria and other infected cells.

The body is thus protected against diseases by these specialized cells of the immune system and this protection is referred to as immunity.

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Immune system – ScienceDaily

Thursday, August 4th, 2016

Reference Terms

from Wikipedia, the free encyclopedia

The immune system is the system of specialized cells and organs that protect an organism from outside biological influences. (Though in a broad sense, almost every organ has a protective function - for example, the tight seal of the skin or the acidic environment of the stomach.) When the immune system is functioning properly, it protects the body against bacteria and viral infections, destroying cancer cells and foreign substances.

If the immune system weakens, its ability to defend the body also weakens, allowing pathogens, including viruses that cause common colds and flu, to grow and flourish in the body.

The immune system also performs surveillance of tumor cells, and immune suppression has been reported to increase the risk of certain types of cancer.

For more information, see the following related content on ScienceDaily:

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What is the Immune System? (with pictures) – wiseGEEK

Thursday, August 4th, 2016

Without it, we would all be forced to live in sterile environments, never touching each other, never feeling a spring breeze, never tasting rain. The immune system is that complex operation within our bodies that keeps us healthy and disease-free.

Few systems in nature are as complicated as the human immune system. It exists apart from, and works in concert with, every other system in the body. When it works, people stay healthy. When it malfunctions, terrible things happen.

The main component of the system is the lymphatic system. Small organs called lymph nodes help carry lymph fluid throughout the body. These nodes are located most prominently in the throat, armpit and groin. Lymph fluid contains lymphocytes and other white blood cells and circulates throughout the body.

The white blood cells are the main fighting soldiers in the body's immune system. They destroy foreign or diseased cells in an effort to clear them from the body. This is why a raised white blood cell count is often an indication of infection. The worse the infection, the more white blood cells the body sends out to fight it.

White and red blood cells are produced in the spongy tissue called bone marrow. This substance, rich in nutrients, is crucial for properly functioning immunity. Leukemia, a cancer of the bone marrow, causes greatly increased production of abnormal white blood cells and allows immature red blood cells to be released into the body. Other features, such as the lowly nose hair and mucus lining in the lungs, help trap bacteria before it gets into the bloodstream to cause an infection.

B cells and T cells are the main kinds of lymphocytes that attack foreign cells. B cells produce antibodies tailored to different cells at the command of the T cells, the regulators of the body's immune response. T cells also destroy diseased cells.

Many diseases that plague mankind are a result of insufficient immunity or inappropriate immune response. A cold, for instance, is caused by a virus. The body doesn't recognize some viruses as being harmful, so the T cell response is, "Pass, friend," and the sneezing begins.

Allergies are examples of inappropriate immune response. The body is hyper-vigilant, seeing that evil pollen as a dangerous invader instead of a harmless yellow powder. Other diseases, such as diabetes and AIDS, suppress the immune system, reducing the body's ability to fight infection.

Vaccines are vital in helping the body fend off certain diseases. The body is injected with a weakened or dead form of the virus or bacteria and produces the appropriate antibodies, giving complete protection against the full-strength form of the disease. This is the reason such disorders as diphtheria, mumps, tetanus and pertussis are so rarely seen today. Children have been vaccinated against them, and the immune system is on the alert. Vaccines have also been instrumental in eradicating plagues such as smallpox and polio.

Antibiotics help the body fight disease as well, but doctors are more cautious about prescribing the broad-spectrum variety, since certain bacteria are starting to show resistance to them. The next time you hug a loved one or smell a rose, thank your immune system.

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What is the Immune System? (with pictures) - wiseGEEK

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Kids Health Your Immune System

Thursday, August 4th, 2016

To be immune (say: ih-MYOON) means to beprotected. So it makes sense that the body system that helps fight off sickness is called the immune system. The immune system is made up of a network of cells, tissues, and organs that work together to protect the body.

White blood cells, also called leukocytes (say: LOO-kuh-sytes), are part of this defense system. There are two basic types of these germ-fighting cells:

Leukocytes are found in lots of places, including your spleen, an organ in your belly that filters blood and helps fight infections. Leukocytes also can be found in bone marrow, which is a thick, spongy jelly inside your bones.

Your lymphatic (say: lim-FAH-tik) system is home to these germ-fighting cells, too. You've encountered your lymphatic system if you've ever had swollen "glands" on the sides of your neck, like when you have a sore throat. Although we call them "glands," they are actually lymph nodes, and they contain clusters of immune system cells. Normally, lymph nodes are small and round and you don't notice them. But when they're swollen, it means your immune system is at work.

Lymph nodes work like filters to remove

So you have this great system in place. Is it enough to keep you from getting sick? Well, everyone gets sick sometimes. But your immune system helps you get well again. And if you've had your shots (also called vaccines), your body is extra-prepared to fight off serious illnesses that your immune system alone might not handle very well. If you get the shot that covers measles, for instance, it can protect you from getting measles, if you're ever exposed to it.

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Kids Health Your Immune System

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Immune System Questions including "Why do some HIV …

Thursday, August 4th, 2016

Answer Billions of dollars a year are being spent trying to find the answer to that one.

Answer Its a dealer code, transmission related. Take it to your dealer for professional diagnosis. Answer just had it done dude it is the torque converter look up the code p1744 and it will tell u

Get new boots! Seriously! The feet swell up a lot in a match, about 2 years ago I bruised/broke both big toenails playing 5 a side and it took about 7 months to repir them back to normal. I had a match a few weeks ago and forgot my boots and had to wear the old pair......should be back to normal by

%REPLIES% Answer SIDS is not caused by immunizations. Most children get their immunizations at about four months which coincides with the average age. But children without immunizations also die of SIDS. Answer There is absolutely no medical evidence that SIDS is caused by getting

Securing Loose Teeth in a Partial Plate It's not really recommended you do it yourself if you get the tooth/teeth in the wrong place the plate won't fit. Take the plate to your dentist for advice or go to a dental technician as many do repairs while you wait

Yes, food does stick to partial dentures. Maybe even worse than snaggly teeth.

It could be a neck bone spur. Look for any sores or scratches in your scalp as this could be a swollen lymph node trying to rid your scalp of infection. See a doctor if there are no other symptoms. If the lump is in the hairline it could be an ingrown hair or a Furuncle, a Furuncle is basically a

Stress can definitely weaken your immune system, as that's one of the MANY things that elevated cortisol, the hormone that controls stress, does. Answer2: When someone is regularly in a tense state, with little relief or understanding of how to cope, stress is common. In fact, some authorities term

Answer The Pirates have the following teams in their farm system for 2007: 1) Indianapolis Indians - International League - AAA 2) Altoona Curve - Eastern League - AA 3) Lynchburg Hillcats - Carolina League - A 4) Hickory Crawdads - South Atlantic League - A 5) State College Spikes - New

Rinse your mouth out several times a day with warm salt water. Swish around in your mouth holding it as long as you can. Don't swallow.

The Luddites were in favor of producing cloth on primitive hand operated looms. Such looms were often in private homes where the weavers worked incredibly long hours to produce not very much cloth. The Luddies were also in favor of NOT letting other people decide how to run their own lives. Like u

Answer this depends. do you mean bleeding/spotting? then yes, it could be normal. some women bleed for a few weeks after an abortion and others don't. go to a follow-up appointment. the doctor will check to make sure everything is okay.

White blood cell count (WBC). The number of white blood cells in a volume of blood. Normal range varies slightly between laboratories but is generally between 4,300 and 10,800 cells per cubic millimeter (cmm). This can also be referred to as the leukocyte count and can be expressed in international

Be Skeptical on 'immune system supplements' there is no conclusive proof in their working... Still, the best way to be safe from diseases is to be vaccinated or to have caught it.Echinacea - (A herbal remedy that helps and boosts the immune system.) B vitamin complex - (This helps to maintain a heal

Answer I think you mean macrophages, not melanophages. The upper layer of your skin is called the epidermis(epi=above or outside.) The epidermis is more of just the tough outer layer of skin that serves as a protective layer. The layer of skin that is below the epidermis is the dermis. T

Answer You can not become immune to it but your body WILL build up a tolerance Answer As the above answer indicates, "immune" is not the right word for describing this. As stated above, your brain (as opposed to other systems in your body) will develop a tolerance to it. This means, even thou

Answer Possibly. See http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12120898&dopt=Abstract, which is a study showing that with short-term and long-term administration of amphetamine in mice at the dosage of 1mg/kg, the immune system response was notably

Well, yo run all your nails under cold water and then put in front a COLD not warm fan.... COLD fan! do that about three times!

A pathogen or infectious agent is a biological agent that causes disease or illness to its host. The term is most often used for agents that disrupt the normal physiology of a multicellular animal or plant. However, pathogens can infect unicellular organisms from all of the biological kingdoms. Toda

Bacteria (plural of bacterium) are microscopicsingle-celled organisms (prokaryotes) that reproduce by binary fission, i.e. one cell splits into two, the two cells split into four, etc., etc. The original Greek word (bakterion) meant "rod" or "staff" (like a walking stick) as the first ones discovere

Answer I have never heard of becoming immune to a birth control method.

Answer Microtubules have two main functions in cells and in doing so act like a skeleton as well as like railroad tracks. Microtubules are the main structural component of the cytoskeleton in cells which provides the cell with structure and rigidity and determines the shape of the cell. They also

Vaccines help a body's immune system prepare in advance to fight infectious illnesses and potentially deadly diseases caused by infectious agents or their by-products. Essentially, vaccines give the body a preview of a bacterium, virus, or toxin allowing it to learn in advance how to defend itself a

Value Delivery System (VDS) No no no no no, ER(: Whether you are working in a sales organization or a factory or an R&D lab, you are also a part of a larger system of delivering value to customers. This end-to-end system that collaborates (at least in some fashion!) to deliver value to custo

Answer This depends on the useage of either system. If you are going to be using it a lot and for a prolonged period of time, the the better option would be a septic tank system. Otherwise if you will be using it for a short period of time, for example, for just the weekend, then a composi

A leukocyte is a white blood cell. They are part of our bodies' defense system. They are produced in bone marrow, you can find them in blood and lymph system. Usually when WBC's or lymphocytes are elevated you have an infection somewhere. Leuk = white Cyte = cellWhite blood cells.

Leukoagglutination is extremely rare in health individuals and is far more common in those suffering from infections, sepsis, lymphoproliferative disorders, alcoholic liver disease, hemophilia, and autoimmune diseases.

An antibody is a protein that your body produces which binds to the surface of a foreign body, like a bacteria or virus, and prevents it from actively damaging your body. Antibodies, generally bind other proteins, and they will bind to specific portions of the proteins. Antibodies have a number of f

An organ of the lymphatic system, the spleen filters blood and destroys old blood cells by sending them to the liver and elsewhere. The spleen also removes foreign matter such as bacteria and produces lymphocytes, cells that are essential for immunity. In humans, the spleen also stores blood to meet

Both the endocrine and respiratory systems are dependent on each other. For example, there are certain hormones like adrenalin, which is released by the adrenal glands, which help to stimulate the respiratory activity. Also, some endocrine hormones have an effect on the dilation of the alveoli, or t

If by circulatory system you mean blood system then the white blood cells or lymphocytes which comes in many forms such as acidophiles, basophiles, NK (natural killer cells) neutrophiles, or macrophages..then it supplies these cells to the site of infection (bacterial or viral) or inflammation...if

phagocytes eat the bacteria by secreting an ensyme

usually its from a bacterial infection probably from certain foods you ate or something else. you should ask your doctor about it.

It could be a sign of Hashimoto's Disease. Have your thyoid checked. Answer There are several things that can cause low lymphocytes in your blood. Lymphocytes is the white cells in your blood which are your bodies defense system against viral problems and infections. Low white cell count

antigen prepared from faecal sample of infected animal

Yes, your immune system is triggered to fight the cold and the immune system starts that process with an immune response. It gets busy making your body create a hostile environment for the virus (with fever and other metabolic changes) as well as producing antibodies to disable the cold virus partic

lymphocytosis,is the name

Your body has different ways to act, depending on the type of pathogen. Many extracellular pathogens get attacked by antibodies, witch stick to the surface of the pathogen and can prevent the uptake of nutrients or from attaching to cells of your body. In many cases these antibodies also facilitate

IMMUNOLOGY

neutrophil

The Thoracic duct (left lymphatic duct) is a part of the lymphatic system. It is the largest lymphatic vessel in the body.

Also known as ring vaccination. Crucial to eradication of smallpox (less vaccine/money needed). From http://www.medterms.com/script/main/art.asp?articlekey=23979:"The vaccination of all susceptible individuals in a prescribed area around an outbreak of an infectious disease. Ring vaccination control

Tears are secretions of lacrimal glands from the eyes which contain an enzyme lysozyme, which is bactericidal and kills pathogenic bacteria by destroying the cell wall of bacteria.

lymphocytic leukemia

Hemp Seeds.

Some people many be more resistant to salmonella, however no-one is immune.

The short answer: If you are exposed to an identical version of the H1N1 flu that you had previously after you have recovered fully from it the first time, then your body should have developed immunity to all genetically identical H1N1 flu and you would not get it a second time. However, the flu can

Bone marrow produces lymphocytes and monocytes and all other blood cells.

If your are sick DO NOT eat of drink anything for six hours if you really need a drink just put some fresh water in your mouth and dont swallowit

Stomach's are not generally transplanted, since it is possible to live without them.

There are studies that suggest that over time the flu vaccines can lose some effectiveness. This is partially due to the original vaccine being less effective on mutated forms of the same virus. But for the same exact strain of H1N1 that is in the vaccine, and others that are very similar to it, man

in the evening, at around 8 - 11pm.

You can get sick from exposure to cold weather without shelter, but it won't be from an infection, it will be due to tissue damage, frostbite, etc. Colds and flu have long been thought to be caused by being cold and/or wet. This has been proven incorrect by numerous studies. Being in the hot or col

In short, CD3 is a transmembrane protein found on T lymphocytes that functions in signal transduction following antigen stimulation of the T cell receptor.

Certain diseases such as AIDS can weaken the bodies immune system making it more susceptible to infections and other conditions. actually once the immune system is destroyed, all kinds of diseases will knock your door.

When you mean administrate, does this mean procedure for TCID50 or calculation for use? In calculating for the TCID50 and EID50 of the virus in question, you can either use the Spearman-Karber formula or the Reed amd Muench formula. You will be able to determine the amount of virus per 0.1 ml or 1.0

thymus Gland

An antibody is a large Y-shaped protein used by the immune system to identify and neutralize foreign objects such as bacteria and viruses. The antibody recognizes a unique part of the foreign target, termed an antigen. Each tip of the "Y" of an antibody contains a paratope (a structure analogous to

Lymphocytes are categorized into B cells, T cells or NK cells. B cells are mainly responsible for the production of antibodies against pathogens while T and NK cells are primarily cytotoxic.The production of antibodies have 3 critical roles in your immune system: opsinization, it neutralizes and it

Stain with basic dyes cytoplasm shows blue precipitates

No. Immune response is triggered by the antigen.

Epitope is the he part of an antigen that is recognised by the antiody and binds on it.

Because it has a lot of very varied jobs to do, and many different pathogens to fight against.

A pathogen is an organism which when act or enter in your body can cause certain kind of disease and make you ill. They are generally microorganisms like bacteria, fungi, viruses, protozoan etc. Basically, a pathogen is a disease causing agent also called virulent ..

I do not think think so, fish oil going to help you in improving immune system and help in cold. Better to take dabur chyawanprash, it always keep you away from cold.

Yes, Lymphocytes are responsible for immunity. But if you take dabur chyawanprash will definietly help you in improving immunity.

Thymus Gland

Generally, no because they include t and b cells which are part of the 3rd line of defense. But there are specific cell types, that are lymphocytes that are considered part of one's innate immune response (2nd line of defense). These are gamma delta T cells, which are involved in the early phages o

Complement

BT-061 is a therapeutic monoclonal antibody that selectively activates regulatory T cells. BT-061 is currently clinically developed by Biotest AG (Germany) for the treatment of autoimmune diseases like Rheumatoid Arthritis and Chronic Plaque Psoriasis. First signs of efficacy with BT-061 and a good

The Fab portion of the antibody is what determines the idiotype. The Fab portion consists of both a heavy and light chain and is connected to the Fc region (isotype). Every B cell will express a different Fab structure and in a single B cell it will produce only the same Fab.

Red blood cell contain a chemical that makes it red but when it dries out it turns black.

Edward Jenner was the creatour of the small pox (which harmed many)antidote

Pneumonia can result from a variety of causes, including infection with bacteria, viruses, fungi, or parasites.

Naiive B cells are lymphocytes that have not yet been exposed to antigen. Once it can identify a particular antigen, it will undergo production of antibodies and become a mature B cell. Mature B cells are split into two categories: plasma B cells and memory B cells. Plasma B cells will continue to p

BCG (bacille Calmette-Guerin) is a vaccination against tuberculosis (TB) disease. It is not used in the U.S.A due to risk on infection and questionable efficacy against TB.

Ginger and mint both help reduce nausea and can be taken as a tea. Just steep some bruised mint leaves or grated fresh ginger in boiling water for about 5 minutes.

Cells use an antigen to recognise a pathogen. The cells then remove the pathogen. If you would like to learn much more detail I suggest checking out the relevant visual aided videos from khan academy on youtube. Look for the biology class playlst

Underlying the actual toe nail are lymph, blood vessels and nerves, thus when you tear or injure it, there is severe pain and bleeding.If you are referring to what you can remove "debris" or "toe jam", it can be composed of dead skin, sweat, dirt, possible minute particles of cloth from socks,if you

IgM is produced upon initial exposure to an antigen. For example, when a person receives the first tetanus vaccination, antitetanus antibodies of the IgM class are produced 10 to 14 days later. IgM is abundant in the blood.

Mucus that are present in body contains macrophages and phagocytes and it acts as first line of defense in our immune system.

This condition occurs when the body produces autoantibodies that coat red blood cells. The coated cells are destroyed by the spleen, liver, or bone marrow.

Pathogen that causes disease AIDS is Human Immunodeficiency Virus (HIV).

Anti-CCP, which stands for anti-cyclic citrullinated peptide antibody, is a new blood test that helps doctors confirm a diagnosis of rheumatoid arthritis. Anti-CCP is a test that can be ordered during the diagnostic evaluation of people that may have rheumatoid arthritis. If it is found at a modera

It slowly kill off the disease by targeting and creating blood cells that can kill the infected cells

white blood cells when they are attacking antigens

The Vaccine exposes the immune system to small doses of a disease so the immune system can recognize it and fight it off when its exposed to the real disease

The first line of immune defense is the skin and mucus membranes. Skin acts as a physical barrior, blocking pathogens from entering. Mucus wihin the nasal cavity blocks some of the pathogens from entering the body. Cilia also aid in protectiong by acting as a barrior as well. There is also mucus lin

antigens are bacteria or virus that cause an illness antibodies are part of the immune system and identify and fight against the foreign bacteria antibiotics are medications used to defend your body from the illness

protects it from harm from either inside issues or outside problems

he is introduced vaccine for smaii pox from cow milk

the B-cells.

It is when you're playing tag with friends and you're not in, then all of a sudden out of nowhere your 'friend' tags you, you feel so suprised and hurt that you go stiff, like a fainting goat when they are suprised. It wears off after awhile, by awhile i mean 2-3 months. You need to constantly be ru

Their immune system is important because without it they would die of bacteria infesting it. Same thing with all living things.

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Fasting for three days can regenerate entire immune system …

Thursday, August 4th, 2016

Fasting for as little as three days can regenerate the entire immune system, even in the elderly, scientists have found in a breakthrough described as "remarkable".

Although fasting diets have been criticised by nutritionists for being unhealthy, new research suggests starving the body kick-starts stem cells into producing new white blood cells, which fight off infection.

Scientists at the University of Southern California say the discovery could be particularly beneficial for people suffering from damaged immune systems, such as cancer patients on chemotherapy.

It could also help the elderly whose immune system becomes less effective as they age, making it harder for them to fight off even common diseases.

The researchers say fasting "flips a regenerative switch" which prompts stem cells to create brand new white blood cells, essentially regenerating the entire immune system.

"It gives the 'OK' for stem cells to go ahead and begin proliferating and rebuild the entire system," said Prof Valter Longo, Professor of Gerontology and the Biological Sciences at the University of California.

"And the good news is that the body got rid of the parts of the system that might be damaged or old, the inefficient parts, during the fasting.

Now, if you start with a system heavily damaged by chemotherapy or ageing, fasting cycles can generate, literally, a new immune system."

Prolonged fasting forces the body to use stores of glucose and fat but also breaks down a significant portion of white blood cells.

During each cycle of fasting, this depletion of white blood cells induces changes that trigger stem cell-based regeneration of new immune system cells.

In trials humans were asked to regularly fast for between two and four days over a six-month period.

Scientists found that prolonged fasting also reduced the enzyme PKA, which is linked to ageing and a hormone which increases cancer risk and tumour growth.

"We could not predict that prolonged fasting would have such a remarkable effect in promoting stem cell-based regeneration of the hematopoietic system," added Prof Longo.

"When you starve, the system tries to save energy, and one of the things it can do to save energy is to recycle a lot of the immune cells that are not needed, especially those that may be damaged," Dr Longo said.

"What we started noticing in both our human work and animal work is that the white blood cell count goes down with prolonged fasting. Then when you re-feed, the blood cells come back. So we started thinking, well, where does it come from?"

Fasting for 72 hours also protected cancer patients against the toxic impact of chemotherapy.

"While chemotherapy saves lives, it causes significant collateral damage to the immune system. The results of this study suggest that fasting may mitigate some of the harmful effects of chemotherapy," said co-author Tanya Dorff, assistant professor of clinical medicine at the USC Norris Comprehensive Cancer Center and Hospital.

"More clinical studies are needed, and any such dietary intervention should be undertaken only under the guidance of a physician.

"We are investigating the possibility that these effects are applicable to many different systems and organs, not just the immune system," added Prof Longo.

However, some British experts were sceptical of the research.

Dr Graham Rook, emeritus professor of immunology at University College London, said the study sounded "improbable".

Chris Mason, Professor of Regenerative Medicine at UCL, said: There is some interesting data here. It sees that fasting reduces the number and size of cells and then re-feeding at 72 hours saw a rebound.

That could be potentially useful because that is not such a long time that it would be terribly harmful to someone with cancer.

But I think the most sensible way forward would be to synthesize this effect with drugs. I am not sure fasting is the best idea. People are better eating on a regular basis.

Dr Longo added: There is no evidence at all that fasting would be dangerous while there is strong evidence that it is beneficial.

I have received emails from hundreds of cancer patients who have combined chemo with fasting, many with the assistance of the oncologists.

Thus far the great majority have reported doing very well and only a few have reported some side effects including fainting and a temporary increase in liver markers. Clearly we need to finish the clinical trials, but it looks very promising.

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Fasting for three days can regenerate entire immune system ...

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Psychological Stress and the Human Immune System: A Meta …

Thursday, August 4th, 2016

Psychol Bull. Author manuscript; available in PMC 2006 Feb 7.

Published in final edited form as:

PMCID: PMC1361287

NIHMSID: NIHMS4008

Suzanne C. Segerstrom, University of Kentucky;

The present report meta-analyzes more than 300 empirical articles describing a relationship between psychological stress and parameters of the immune system in human participants. Acute stressors (lasting minutes) were associated with potentially adaptive upregulation of some parameters of natural immunity and downregulation of some functions of specific immunity. Brief naturalistic stressors (such as exams) tended to suppress cellular immunity while preserving humoral immunity. Chronic stressors were associated with suppression of both cellular and humoral measures. Effects of event sequences varied according to the kind of event (trauma vs. loss). Subjective reports of stress generally did not associate with immune change. In some cases, physical vulnerability as a function of age or disease also increased vulnerability to immune change during stressors.

Since the dawn of time, organisms have been subject to evolutionary pressure from the environment. The ability to respond to environmental threats or stressors such as predation or natural disaster enhanced survival and therefore reproductive capacity, and physiological responses that supported such responses could be selected for. In mammals, these responses include changes that increase the delivery of oxygen and glucose to the heart and the large skeletal muscles. The result is physiological support for adaptive behaviors such as fight or flight. Immune responses to stressful situations may be part of these adaptive responses because, in addition to the risk inherent in the situation (e.g., a predator), fighting and fleeing carries the risk of injury and subsequent entry of infectious agents into the bloodstream or skin. Any wound in the skin is likely to contain pathogens that could multiply and cause infection (Williams & Leaper, 1998). Stress-induced changes in the immune system that could accelerate wound repair and help prevent infections from taking hold would therefore be adaptive and selected along with other physiological changes that increased evolutionary fitness.

Modern humans rarely encounter many of the stimuli that commonly evoked fight-or-flight responses for their ancestors, such as predation or inclement weather without protection. However, human physiological response continues to reflect the demands of earlier environments. Threats that do not require a physical response (e.g., academic exams) may therefore have physical consequences, including changes in the immune system. Indeed, over the past 30 years, more than 300 studies have been done on stress and immunity in humans, and together they have shown that psychological challenges are capable of modifying various features of the immune response. In this article we attempt to consolidate empirical knowledge about psychological stress and the human immune system through meta-analysis. Both the construct of stress and the human immune system are complex, and both could consume book-length reviews. Our review, therefore, focuses on those aspects that are most often represented in the stress and immunity literature and therefore directly relevant to the meta-analysis.

Despite nearly a century of research on various aspects of stress, investigators still find it difficult to achieve consensus on a satisfactory definition of this concept. Most of the studies contributing to this review simply define stress as circumstances that most people would find stressful, that is, stressors. We adopted Elliot and Eisdorfers (1982) taxonomy to characterize these stressors. This taxonomy has the advantage of distinguishing among stressors on two important dimensions: duration and course (e.g., discrete vs. continuous). The taxonomy includes five categories of stressors. Acute time-limited stressors involve laboratory challenges such as public speaking or mental arithmetic. Brief naturalistic stressors, such as academic examinations, involve a person confronting a real-life short-term challenge. In stressful event sequences, a focal event, such as the loss of a spouse or a major natural disaster, gives rise to a series of related challenges. Although affected individuals usually do not know exactly when these challenges will subside, they have a clear sense that at some point in the future they will. Chronic stressors, unlike the other demands we have described, usually pervade a persons life, forcing him or her to restructure his or her identity or social roles. Another feature of chronic stressors is their stabilitythe person either does not know whether or when the challenge will end or can be certain that it will never end. Examples of chronic stressors include suffering a traumatic injury that leads to physical disability, providing care for a spouse with severe dementia, or being a refugee forced out of ones native country by war. Distant stressors are traumatic experiences that occurred in the distant past yet have the potential to continue modifying immune system function because of their long-lasting cognitive and emotional sequelae (Baum, Cohen, & Hall, 1993). Examples of distant stressors include having been sexually assaulted as a child, having witnessed the death of a fellow soldier during combat, and having been a prisoner of war.

In addition to the presence of difficult circumstances, investigators also use life-event interviews and life-event checklists to capture the total number of different stressors encountered over a specified time frame. Depending on the instrument, the focus of these assessments can be either major life events (e.g., getting divorced, going bankrupt) or minor daily hassles (e.g., getting a speeding ticket, having to clean up a mess in the house). With the more sophisticated instruments, judges then code stressor severity according to how the average person in similar biographical circumstances would respond (e.g., S. Cohen et al., 1998; Evans et al., 1995).

A smaller number of studies enrolled large populations of adults who were not experiencing any specific difficulty and examined whether their immune responses varied according to their reports of perceived stress, intrusive thoughts, or both. Other studies have examined stressed populations, in which a larger range of subjective responses may be detected. This work grows out of the view that peoples biological responses to stressful circumstances are heavily dependent on their appraisals of the situation and cognitive and emotional responses to it (Baum et al., 1993; Frankenhauser, 1975; Tomaka, Blascovich, Kibler, & Ernst, 1997).

As many behavioral scientists are unfamiliar with the details of the immune system, we provide a brief overview. For a more complete treatment, the reader is directed to the sources for the information presented here (Benjamini, Coico, & Sunshine, 2000; Janeway & Travers, 1997; Rabin, 1999). Critical characteristics of various immune components and assays are also listed in .

Immune Parameters Reported and Critical Characteristics

There are several useful ways of dividing elements of the immune response. For the purposes of understanding the relationship of psychosocial stressors to the immune system, it is useful to distinguish between natural and specific immunity. Natural immunity is an immune response that is characteristic not only of mammals but also lower order organisms such as sponges. Cells involved in natural immunity do not provide defense against any particular pathogen; rather, they are all-purpose cells that can attack a number of different pathogens1 and do so in a relatively short time frame (minutes to hours) when challenged. The largest group of cells involved in natural immunity is the granulocytes. These cells include the neutrophil and the macrophage, phagocytic cells that, as their name implies, eat their targets. The generalized response mounted by these cells is inflammation, in which neutrophils and macrophages congregate at the site of injury or infection, release toxic substances such as oxygen radicals that damage invaders, and phagocytose both invaders and damaged tissue. Macrophages in particular also release communication molecules, or cytokines, that have broad effects on the organism, including fever and inflammation, and also promote wound healing. These proinflammatory cytokines include interleukin(IL)-1, IL-6, and tumor necrosis factor alpha (TNF). Other granulocytes include the mast cell and the eosinophil, which are involved in parasitic defense and allergy.

Another cell involved in natural immunity is the natural killer cell. Natural killer cells recognize the lack of a self-tissue molecule on the surface of cells (characteristic of many kinds of virally infected and some cancerous cells) and lyse those cells by releasing toxic substances on them. Natural killer cells are thought to be important in limiting the early phases of viral infections, before specific immunity becomes effective, and in attacking self-cells that have become malignant.

Finally, complement is a family of proteins involved in natural immunity. Complement protein bound to microorganisms can up-regulate phagocytosis and inflammation. Complement can also aid in antibody-mediated immunity (discussed below as part of the specific immune response).

Specific immunity is characterized by greater specificity and less speed than the natural immune response. Lymphocytes have receptor sites on their cell surfaces. The receptor on each cell fits with one and only one small molecular shape, or antigen, on a given invader and therefore responds to one and only one kind of invader. When activated, these antigen-specific cells divide to create a population of cells with the same antigen specificity in a process called clonal proliferation, or the proliferative response. Although this process is efficient in terms of the number of cells that have to be supported on a day-to-day basis, it creates a delay of up to several days before a full defense is mounted, and the body must rely on natural immunity to contain the infection during this time.

There are three types of lymphocytes that mediate specific immunity: T-helper cells, T-cytotoxic cells, and B cells. The main function of T-helper cells is to produce cytokines that direct and amplify the rest of the immune response. T-cytotoxic cells recognize antigen expressed by cells that are infected with viruses or otherwise compromised (e.g., cancer cells) and lyse those cells. B cells produce soluble proteins called antibody that can perform a number of functions, including neutralizing bacterial toxins, binding to free virus to prevent its entry into cells, and opsonization, in which a coating of antibody increases the effectiveness of natural immunity. There are five kinds of antibody: Immunoglobulin (Ig) A is found in secretions, IgE binds to mast cells and is involved in allergy, IgM is a large molecule that clears antigen from the bloodstream, IgG is a smaller antibody that diffuses into tissue and crosses the placenta, and IgD is of unknown significance but may be produced by immature B cells.

An important immunological development is the recognition that specific immunity in humans is composed of cellular and humoral responses. Cellular immune responses are mounted against intracellular pathogens like viruses and are coordinated by a subset of T-helper lymphocytes called Th1 cells. In the Th1 response, the T-helper cell produces cytokines, including IL-2 and interferon gamma (IFN). These cytokines selectively activate T-cytotoxic cells as well as natural killer cells. Humoral immune responses are mounted against extracellular pathogens such as parasites and bacteria; they are coordinated by a subset of T-helper lymphocytes called Th2 cells. In the Th2 response, the T-helper cell produces different cytokines, including IL-4 and IL-10, which selectively activate B cells and mast cells to combat extracellular pathogens.

Immune assays can quantify cells, proteins, or functions. The most basic parameter is a simple count of the number of cells of different subtypes (e.g., neutrophils, macrophages), typically from peripheral blood. It is important to have an adequate number of different types of immune cells in the correct proportions. However, the normal range for these enumerative parameters is quite large, so that correct numbers and proportions can cover a wide range, and small changes are unlikely to have any clinical significance in healthy humans.

Protein productioneither of antibody or cytokinescan be measured in vitro by stimulating cells and measuring protein in the supernatant or in vivo by measuring protein in peripheral blood. For both antibody and cytokine, higher protein production may represent a more robust immune response that can confer protection against disease. Two exceptions are levels of proinflammatory cytokines (IL-1, IL-6, and TNF) and antibody against latent virus. Proinflammatory cytokines are increased with systemic inflammation, a risk factor for poorer health resulting from cardiac disease, diabetes mellitus, or osteoporosis (Ershler & Keller, 2000; Luster, 1998; Papanicoloaou, Wilder, Manolagas, & Chrousos, 1998). Antibody production against latent virus occurs when viral replication triggers the immune system to produce antibodies in an effort to contain the infection. Most people become infected with latent viruses such as Epstein-Barr virus during adolescence and remain asymptomatically infected for the rest of their lives. Various processes can activate these latent viruses, however, so that they begin actively replicating. These processes may include a breakdown in cellular immune response (Jenkins & Baum, 1995). Higher antibody against latent viruses, therefore, may indicate poorer immune control over the virus.

Functional assays, which are performed in vitro, measure the ability of cells to perform specific activities. In each case, higher values may represent more effective immune function. Neutro-phils function can be quantified by their ability to migrate in a laboratory assay and their ability to release oxygen radicals. The natural killer cytotoxicity assay measures the ability of natural killer cells to lyse a sensitive target cell line. Lymphocyte proliferation can be stimulated with mitogens that bypass antigen specificity to activate cells or by stimulating the T cell receptor.

How could stress get inside the body to affect the immune response? First, sympathetic fibers descend from the brain into both primary (bone marrow and thymus) and secondary (spleen and lymph nodes) lymphoid tissues (Felten & Felten, 1994). These fibers can release a wide variety of substances that influence immune responses by binding to receptors on white blood cells (Ader, Cohen, & Felten, 1995; Felten & Felten, 1994; Kemeny, Solomon, Morley, & Herbert, 1992; Rabin, 1999). Though all lymphocytes have adrenergic receptors, differential density and sensitivity of adrenergic receptors on lymphocytes may affect responsiveness to stress among cell subsets. For example, natural killer cells have both high-density and high-affinity 2-adrenergic receptors, B cells have high density but lower affinity, and T cells have the lowest density (Anstead, Hunt, Carlson, & Burki, 1998; Landmann, 1992; Maisel, Fowler, Rearden, Motulsky, & Michel, 1989). Second, the hypothalamicpituitaryadrenal axis, the sympatheticadrenalmedullary axis, and the hypothalamicpituitaryovarian axis secrete the adrenal hormones epinephrine, norepinephrine, and cortisol; the pituitary hormones prolactin and growth hormone; and the brain peptides melatonin, -endorphin, and enkephalin. These substances bind to specific receptors on white blood cells and have diverse regulatory effects on their distribution and function (Ader, Felten, & Cohen, 2001). Third, peoples efforts to manage the demands of stressful experience sometimes lead them to engage in behaviorssuch as alcohol use or changes in sleeping patternsthat also could modify immune system processes (Kiecolt-Glaser & Glaser, 1988). Thus, behavior represents a potentially important pathway linking stress with the immune system.

Maier and Watkins (1998) proposed an even closer relationship between stress and immune function: that the immunological changes associated with stress were adapted from the immunological changes in response to infection. Immunological activation in mammals results in a syndrome called sickness behavior, which consists of behavioral changes such as reduction in activity, social interaction, and sexual activity, as well as increased responsiveness to pain, anorexia, and depressed mood. This syndrome is probably adaptive in that it results in energy conservation at a time when such energy is best directed toward fighting infection. Maier and Watkins drew parallels between the behavioral, neuroendo-crine, and thermoregulatory responses to sickness and stress. The common thread between the two is the energy mobilization and redirection that is necessary to fight attackers both within and without.

Conceptualizations of the nature of the relationship between stress and the immune system have changed over time. Selyes (1975) finding of thymic involution led to an initial model in which stress is broadly immunosuppressive. Early human studies supported this model, reporting that chronic forms of stress were accompanied by reduced natural killer cell cytotoxicity, suppressed lymphocyte proliferative responses, and blunted humoral responses to immunization (see S. Cohen, Miller, & Rabin, 2001; Herbert & Cohen, 1993;Kiecolt-Glaser, Glaser, Gravenstein, Malarkey, & Sheridan, 1996, for reviews). Diminished immune responses of this nature were assumed to be responsible for the heightened incidence of infectious and neoplastic diseases found among chronically stressed individuals (Andersen, Kiecolt-Glaser, & Glaser, 1994; S. Cohen & Williamson, 1991).

Although the global immunosuppression model enjoyed long popularity and continues to be influential, the broad decreases in immune function it predicts would not have been evolutionarily adaptive in life-threatening circumstances. Dhabhar and McEwen (1997, 2001) proposed that acute fight-or-flight stressors should instead cause redistribution of immune cells into the compartments in which they can act the most quickly and efficiently against invaders. In a series of experiments with mice, they found that during acute stress, T cells selectively redistributed into the skin, where they contributed to enhancement of the immune response. In contrast, during chronic stress, T cells were shunted away from the skin, and the immune response to skin test challenge was diminished (Dhabhar & McEwen, 1997). On the basis of these findings they proposed a biphasic model in which acute stress enhances, and chronic stress suppresses, the immune response.

A modification of this model posits that short-term changes in all components of the immune system (natural and specific) are unlikely to occur because they would expend too much energy to be adaptive in life-threatening circumstances. Instead, stress should shift the balance of the immune response toward activating natural processes and diminishing specific processes. The premise underlying this model is that natural immune responses are better suited to managing the potential complications of life-threatening situations than specific immune responses because they can unfold much more rapidly, are subject to fewer inhibitory constraints, and require less energy to be diverted from other bodily systems that support the fight-or-flight response (Dopp, Miller, Myers, & Fahey, 2000; Sapolsky, 1998).

Even with this modification of the biphasic model, neither it nor the global immunosuppression model sufficiently explains findings that link chronic stress with both disease outcomes associated with inadequate immunity (infectious and neoplastic disease) and disease outcomes associated with excessive immune activity (allergic and autoimmune disease). To resolve this paradox, some researchers have chosen to focus on how chronic stress might shift the balance of the immune response. The most well-known of these models hypothesizes that chronic stress elicits simultaneous enhancement and suppression of the immune response by altering patterns of cytokine secretion (Marshall et al., 1998). Th1 cytokines, which activate cellular immunity to provide defense against many kinds of infection and some kinds of neoplastic disease, are suppressed. This suppression has permissive effects on production of Th2 cytokines, which activate humoral immunity and exacerbate allergy and many kinds of autoimmune disease. This shift can occur via the effects of stress hormones such as cortisol (Chiappelli, Manfrini, Franceschi, Cossarizza, & Black, 1994). Th1-to-Th2 shift changes the balance of the immune response without necessarily changing the overall level of activation or function within the system. Because a diminished Th1-mediated cellular immune response could increase vulnerability to infectious and neoplastic disease, and an enhanced Th-2 mediated humoral immune response could increase vulnerability to autoimmune and allergic diseases, this cytokine shift model also is able to reconcile patterns of stress-related immune change with patterns of stress-related disease outcomes (Marshall et al., 1998).

If the stress response in the immune system evolved, a healthy organism should not be adversely affected by activation of this response because such an effect would likely have been selected against. Although there is direct evidence that stress-related immunosuppression can increase vulnerability to disease in animals (e.g., Ben Eliyahu, Shakhar, Page, Stefanski, & Shakhar, 2000; Quan et al., 2001; Shavit et al., 1985; Sheridan et al., 1998), there is little or no evidence linking stress-related immune change in healthy humans to disease vulnerability. Even large stress-induced immune changes can have small clinical consequences because of the redundancy of the immune systems components or because they do not persist for a sufficient duration to enhance disease susceptibility. In short, the immune system is remarkably flexible and capable of substantial change without compromising an otherwise healthy host.

However, the flexibility of the immune system can be compromised by age and disease. As humans age, the immune system becomes senescent (Boucher et al., 1998; Wikby, Johansson, Ferguson, & Olsson, 1994). As a consequence, older adults are less able to respond to vaccines and mount cellular immune responses, which in turn may contribute to early mortality (Ferguson, Wikby, Maxson, Olsson, & Johansson, 1995; Wayne, Rhyne, Garry, & Goodwin, 1990). The decreased ability of the immune system to respond to stimulation is one indicator of its loss of flexibility.

Loss of self-regulation is also characteristic of disease states. In autoimmune disease, for example, the immune system treats self-tissue as an invader, attacking it and causing pathology such as multiple sclerosis, rheumatoid arthritis, Crohns disease, and lupus. Immune reactions can also be exaggerated and pathological, as in asthma, and suggest loss of self-regulation. Finally, infection with HIV progressively incapacitates T-helper cells, leading to loss of the regulation usually provided by these cells. Although each of these diseases has distinct clinical consequences, the change in the immune system from flexible and balanced to inflexible and unbalanced suggests increased vulnerability to stress-related immune dysregulation; furthermore, dysregulation in the presence of disease may have clinical consequences (e.g., Bower, Kemeny, Taylor, & Fahey, 1998).

We performed a meta-analysis of published results linking stress and the immune system. We feel that this area is in particular need of a quantitative review because of the methodological nature of most studies in this area. For practical and economic reasons, many psychoneuroimmunology studies have a relatively small sample size, creating the possibility of Type II error. Furthermore, many studies examine a broad range of immunological parameters, creating the possibility of Type I error. A quantitative review, of which meta-analysis is the best example, can better distinguish reliable effects from those arising from both Type I and Type II error than can a qualitative review.

We combined studies in such a way as to test the models of stress and immune change reviewed above. First, we examined each stressor type separately, yielding separate effects for stressors of different duration and trajectory. Second, we examined both healthy and medical populations, allowing comparison of the effects of stress on resilient and vulnerable populations; along the same lines, we also examined the effects of age. Finally, we examined all immune parameters separately so that patterns of response (e.g., global immunosuppression vs. cytokine shift) would be clearer.

Articles for the meta-analysis were identified through computerized literature searches and searches of reference lists. MEDLINE and PsycINFO were searched for the years 1960 2001. Following the example of Herbert and Cohen (1993), we used the terms stress, hassles, and life events in combination with the term immune to search both databases. The reference lists of 11 review articles on stress and the immune system (Benschop, Geenen, et al., 1998; Biondi, 2001; Cacioppo, 1994; S. Cohen & Herbert, 1996; S. Cohen et al., 2001; Herbert & Cohen, 1993; Kiecolt-Glaser, Cacioppo, Malarkey, & Glaser, 1992; Kiecolt-Glaser, McGuire, Robles, & Glaser, 2002; Maier, Watkins, & Fleshner, 1994; OLeary, 1990; Zorrilla et al., 2001) were then searched to identify additional articles.

We selected only articles that met a number of inclusion criteria. The first criterion was that the work had to include a measure of stress. This criterion could be met if a sample experiencing a stressor was compared with an unstressed control group, if a sample experiencing a stressor was compared with itself at a baseline that could reasonably be considered low stress, or if differing degrees of stress in a sample were assessed with an explicit measure of stress. This criterion was not met if, for example, anxietyan affective statewas used as a proxy for stress, or it seemed likely that a baseline assessment occurred during periods of significant stress. The second criterion was that the stressor had to be psychosocial. Stressors that included a significant physical element such as pain, cold, or physical exhaustion were eliminated (e.g., Antarctic isolation, space flight, military training). The third criterion was that the work had to include a measure of the immune system. This criterion was met by any enumerative or functional in vitro or in vivo immune assay. However, clinical disease outcomes such as HIV progression or rhinovirus infection did not meet this criterion. Finally, we eliminated articles from which a meaningful effect size could not be abstracted. For example, when between- and within-subjects observations were treated as independent, the reported effect was likely to be inflated. In a few cases, effects of stress and clinical status were confoundedthat is, a stressed clinical group was compared with an unstressed healthy groupand hence these studies were excluded from the meta-analysis.

We coded stressors in the articles into five classes: acute time-limited, brief naturalistic, event sequence, chronic, and distant. The most difficult distinctions among event sequence, chronic, and distant stressors were based on temporal and qualitative considerations. Event sequences included discrete stressors occurring 1 year or less before immune assessment and could be of any severity. These were most often normative stressors such as bereavement. Chronic stressors were ongoing stressors such as caregiving and disability. Distant stressors were severe, traumatic events that could meet the stressor criterion for posttraumatic stress disorder (American Psychiatric Association, 1994), such as combat exposure or abuse, and had happened more than 1 year before immune assessment. Most stressors in this category occurred 5 to 10 years before immune assessment. Disagreements in stressor classification were resolved by consensus. Subgroups for moderator analyses were similarly decided.

Meta-analysis is a tool for synthesizing research findings. It proceeds in two phases. In the first, effect sizes are computed for each study. An effect size represents the magnitude of the relationship between two variables, independent of sample size. In this context it can be viewed as a measure of how much two groups, one experiencing a stressor and the other not, differ on a specific immune outcome. In the second phase, effect sizes from individual studies are combined to arrive at an aggregate effect size for each immune outcome of interest.

We used Pearsons r as the effect size metric in this meta-analysis. Effect sizes for individual studies were computed using descriptive statistics presented in the original published reports. When these statistics were not available, we requested them from authors. This strategy was successful in most circumstances. To compute Pearsons r from descriptive statistics in between-subjects designs, we subtracted the control group mean from the stressed group mean and divided this value by the pooled sample standard deviation. The value that emerged from this computation, known as Cohens d, was then converted into a Pearsons r by taking the square root of the quantity d2/(d2 + 4). (See Rosenthal, 1994.) To compute Pearsons r from descriptive statistics in within-subjects designs, we subtracted the group mean at baseline from the group mean during stress and divided this quantity by the sample standard deviation at baseline. This d value was converted into a Pearsons r by taking the square root of the quantity d2/(d2 + 4). In cases in which descriptive statistics were not available, Pearsons r was computed from inferential statistics using standard formulae (Rosenthal, 1994). These formulae had to be modified slightly for studies that used within-subjects designs because effect sizes are systematically overestimated when they are calculated from repeated measures test statistics (Dunlap, Cortina, Vaslow, & Burke, 1996). In these situations we derived effect size estimates using the formula d = tc[2 (1 r)]1/2, where tc corresponds to the value of the t statistic for correlated measures, and r corresponds to the value of the correlation between outcome measures at pretest and posttest (Dunlap et al., 1996). Because very few studies reported the value of r, we used a value of .60 to compute effect sizes in this meta-analysis. This represents the average correlation between pre-stress and poststress measures of immune function in a series of studies performed in our laboratories. To ensure that the meta-analytic findings were robust to variations in r, we conducted follow-up analyses using r values ranging from .45 to .75. Very similar findings emerged from these analyses, suggesting that the values we present below are reliable estimates of effect size. If anything, they are probably conservative estimates, because the prepost correlation between immune measures often is substantially lower than .60.

The effect size estimates from individual studies were subsequently aggregated using random-effects models with the software program Comprehensive Meta-Analysis (Borenstein & Rothstein, 1999). The random-effects model views each study in a meta-analysis as a random observation drawn from a universe of potential investigations. As such, it assumes that the magnitude of the relationship between stress and the immune system differs across studies as a result of random variance associated with sampling error and differences across individuals in the processes of interest. Because of these assumptions, random-effects models not only permit one to draw inferences about studies that have been done but also to generalize to studies that might be done in the future (Raudenbush, 1994; Shadish & Haddock, 1994). It also bears noting that in the population of studies on stress and immunity there is likely to be a fair amount of nonrandom variance, as researchers who examine ostensibly similar phenomena may still differ in terms of the samples they recruit, the operational definition of stress they use, and the laboratory methods they utilize to assess a specific immune process.

Separate random-effects models were computed for each immune outcome included in the meta-analysis. Prior to computing the random-effects model, r values derived from each study were z-transformed by the software program, as recommended by Shadish and Haddock (1994), to stabilize variance. The z values were later back-transformed into r values to facilitate interpretation of the meta-analytic findings. In the end, each random-effects model yielded an aggregate weighted effect size r, which can be interpreted the same way as a correlation coefficient, ranging in value from 1.00 to 1.00. Each r statistic was weighted before aggregation by multiplying its value by the inverse of its variance; this procedure enabled larger studies to contribute to effect size estimates to a greater extent than smaller ones. Weighting effect sizes is important because larger studies provide more accurate estimates of true population parameters (Shadish & Haddock, 1994). After each aggregate effect size had been derived, we computed 95% confidence intervals around it, assessed whether it was statistically significant, and computed a heterogeneity coefficient to determine whether the studies contributing to it had yielded consistent findings. Following convention, aggregate effect sizes were considered statistically different from zero when (a) their corresponding z value was greater than 1.96 and (b) the 95% confidence intervals around them did not include the value zero (Rosenthal, 1991; Shadish & Haddock, 1994).

To determine whether the studies contributing to each aggregate effect size shared a common population value, we computed the heterogeneity statistic Q (Shadish & Haddock, 1994). This statistic is chi-square distributed with k 1 degrees of freedom, where k represents the number of independent effect sizes included. When a statistically significant heterogeneity test emerged, we searched for moderators (characteristics of the participants, stressful experience, or measurement strategy) that could explain the variability across studies. The first step in this process involved estimating correlations between participant characteristics (e.g., mean age, percentage female) and immune effects to examine whether the strength of effects varied according to demographics. When it was possible to do so, we then stratified the studies according to characteristics of the stressful experience (e.g., duration, quality) or the measurement strategy (e.g., interview, checklist), and computed separate random-effects analyses for each subgroup.

Occasionally authors of studies failed to report the descriptive or inferential statistics needed to compute an effect size. In some of these cases, the authors noted that there was a significant difference between a stressed and control group. When this occurred, we computed effect sizes assuming that p values were equivalent to .05. This represents a conservative approach because the actual p values were probably smaller. In other cases, the authors noted that a stressed and control group did not differ with respect to an immune outcome, but failed to provide any further statistical information. When this occurred, we computed effect sizes assuming that there was no difference at all between the groups (r = .00). Because there is seldom no difference at all between two groups, this also represents a conservative strategy. Imputation was used in less than 7% of cases.

The validity of a meta-analysis rests on the assumption that each value contributing an aggregate effect size is statistically independent of the others (Rosenthal, 1991). We devised a number of strategies to avoid violating this independence assumption. First, in studies that assessed stimulated-lymphocyte proliferation at multiple mitogen dosages, we computed the average effect size across mitogen dosages, and we used this value to derive aggregate indices. We used an analogous strategy for studies that assessed natural killer cell cytotoxicity at multiple effector:target cell ratios. Second, in studies that utilized designs in which multiple laboratory stressors were compared with a control condition, the average effect size across stressor conditions was computed and later used to derive aggregate indices. Because this averaging procedure in most cases yielded an effect size that was smaller than that of the most potent stressor, we also computed meta-analyses using the larger of the effect sizes from each study rather than the average. Doing so did not alter any of the substantive findings we report. Third, in studies in which immune outcomes were assessed on multiple occasions during a stressful experience, the average effect size across occasions was used to derive aggregate indices. Note that we did not conduct meta-analyses of recovery effects, that is, immune values after a stressor had ended. Although such an analysis would answer interesting questions about the stress-recovery process, there were not enough studies that included similar immune outcomes assessed at similar time points after stress to permit a complete analysis. Fourth, because some data were published in more than one outlet, we contacted authors of multiple publications to determine sample independence or dependence.

The meta-analysis is based on effect sizes derived from 293 independent studies. These studies were reported in 319 separate articles in peer-reviewed scientific journals (see ). A total of 18,941 individuals participated in these studies. Their mean age was 34.8 years (SD = 15.9). Although the studies collectively included a broad range of age groups (range = 578 years), most focused heavily on younger adults. More than half of the studies (51.3%) had a mean age under 30.0 years, and more than four fifths (84.8%) had a mean age under 55.0 years. Slightly more than two thirds of the studies (68.5%) included women; in the average study almost half (42.8%) of the participants were female. The vast majority of studies (84.8%) focused on medically healthy adults.2 Of those that included medical populations, most focused on HIV/AIDS (k = 18; 38.3%), arthritis (k = 6; 12.8%), cancer (k = 5; 10.6%), or asthma (k = 4; 8.5%).

Studies Used in the Meta-Analysis by Type of Stressor

With respect to the kinds of stressors examined by studies in the meta-analysis, the most commonly utilized models were acute laboratory challenges (k = 85; 29.0%) and brief naturalistic stressors (k = 63; 21.5%). Stressful event sequences (k = 30; 10.2%), chronic stressors (k = 23; 7.8%), and distant traumatic experiences (k = 9; 3.1%) were explored less frequently. More than a quarter of the studies in the meta-analysis modeled the stress process by administering nonspecific life-event checklists (k = 53; 18.1%) and/or global perceived stress measures (k = 21; 7.1%) to participants. A small minority of studies examined whether reports of perceived stress or intrusive memories were associated with the extent of immune dysregulation within populations who had suffered a specific traumatic experience (k = 9; 3.1%).

The studies in the meta-analysis examined 292 distinct immune system outcomes. A minority of these outcomes were assessed in three or more studies (k = 87; 30.0%), and as such, they are the focus of the meta-analyses we present in the rest of this article (see ). The most commonly assessed enumerative outcomes were counts of T-helper lymphocytes (k = 90; 30.7%), T-cytotoxic lymphocytes (k = 81; 27.6%), natural killer cells (k = 67; 22.9%), and total lymphocytes (k = 52; 17.7%). The most commonly assessed functional outcomes were natural killer cell cytotoxicity (k = 94; 32.1%) and lymphocyte proliferation stimulated by the mitogens phytohemagglutinin (PHA; k = 65; 22.2%), concanavalin A (ConA; k = 39; 13.3%), and pokeweed mitogen (PWM; k = 26; 8.9%).

lists the immune parameters analyzed with the arm of the immune system to which they belong (natural or specific) and, briefly, their function. Where relevant, cell surface markers used to identify classes of immunocytes in flow cytometry are given. For example, the cell surface marker CD19 is used to identify B lymphocytes. Recall that different models of stress and the immune system posit differential effects of stress on subsets of the immune systemfor example, natural versus specific immunity or cellular (Th1) versus humoral (Th2) immunity. acts as a guide for interpreting the pattern of results in light of these models.

In the following sections we describe the meta-analytic results for each stressor category. A useful rule of thumb for judging effect sizes is to consider values of .10, .30, and .50 as corresponding to small, medium, and large effects, respectively (J. Cohen & Cohen, 1983); more generally, the aggregate effect size r can be interpreted in the same fashion as a correlation, with values ranging from 1.00 to 1.00. Positive values indicate that the presence of a stressor increases a particular immune parameter relative to some baseline (or control) condition. We should caution the reader that in some analyses, our statistics are derived from as few as three independent studies. Although meta-analyses of small numbers of studies do not pose any major statistical problems, it is important to remember that they have limited power to detect statistically significant effect sizes. What a meta-analysis can accurately provide in these instances, however, is an estimate of how much and what direction a given stressors presence influences a specific immune outcome (i.e., an effect size estimate).

Acute time-limited stressors included primarily experimental manipulations of stressful experiences, such as public speaking and mental arithmetic, that lasted between 5 and 100 min. Reliable effects on the immune system included increases in immune parameters, especially natural immunity. The most robust effect of this kind of experience was a marked increase in the number of natural killer cells (r =.43) and large granular lymphocytes (r =.53) in peripheral blood (see ). This effect is consistent with the view that acute stressors cause immune cells to redistribute into the compartments in which they will be most effective (Dhabhar & McEwen, 1997). However, other types of lymphocytes did not show robust redistribution effects: B cells and T-helper cells showed very little change (rs = .07 and .01, respectively), and this change was not statistically significant across studies. T-cytotoxic lymphocytes did tend to increase reliably in peripheral blood, though to a lesser degree than their natural immunity counterparts (r =.20); this increase drove a reliable decline in the T-helper:T-cytotoxic ratio (r = .23). However, natural killer cells as well as T-cytotoxic cells can express CD8, the marker most often used to define the latter population. Because some studies did not use the T cell receptor (CD3) to differentiate between CD3CD8+ natural killer cells and CD3+CD8+ T-cytotoxic cells, it is possible that the effect for T-cytotoxic cells is actually being driven by natural killer cells (Benschop, Rodriguez-Feuerhahn, & Schedlowski, 1996).

Meta-Analysis of Immune Responses to Acute Time-Limited Stress in Healthy Participants

The results for cell percentages roughly parallel those for number. However, the percentage data are harder to interpret because any given parameter is linearly dependent on the other parameters: For example, the enumerative data suggest that the decrease in percentage T-helper cells (r = .24) is probably an artifact of the increases in percentage natural killer cells (r = .24) and percentage T-cytotoxic cells (r = .09).

Another effect that may be considered a redistribution effect is the significant increase in secretory IgA in saliva (r = .22). The time frame of these acute stressors is too short for the synthesis of a significant amount of new antibody; therefore, this increase is probably due to release of already-synthesized antibody from plasma cells and increased translocation of antibody across the epithelium and into saliva (Bosch, Ring, de Geus, Veerman, & Amerongen, 2002). This effect therefore represents relocation, albeit of an immune protein rather than an immune cell.

There were also a number of functional effects. First, natural killer cell cytotoxicity significantly increased with acute stressors (r = .30), but only when the concomitant increase in proportion of natural killer cells in the effector mix was not removed statistically. When examined on a per-cell basis, cytotoxicity did not significantly increase (r = .12). One could, therefore, consider the increase in cytotoxicity a methodological artifact of the definition of effector in effector:target ratios. However, to the degree that one is interested in the general cytotoxic potential of the contents of peripheral blood rather than that of a specific natural killer cell, the uncorrected value is more illustrative. Second, mitogen-stimulated proliferative responses decreased significantly. Again, this could be a methodological artifact of the mix of cells in the assay. However, the proportion of total T and B cells, which are responsible for the proliferative response to PWM and ConA, did not decrease as reliably or as much as did the proliferative response (rs = .05 to .11 vs. .10 to .17), suggesting that acute stressors do decrease this function of specific immunity. Finally, the production of two cytokines, IL-6 and IFN, was increased significantly following acute stress (rs = .28 and .21, respectively).

The data for acute stressors, therefore, support an upregulation of natural immunity, as reflected by increased number of natural killer cells in peripheral blood, and potential downregulation of specific immunity, as reflected by decreased proliferative responses. Other indicators of upregulated natural immunity include increased neutrophil numbers in peripheral blood (r = .30), increased production of a proinflammatory cytokine (IL-6), and increased production of a cytokine that potently stimulates macrophages and natural killer cells as well as T cells (IFN). The only exception to this pattern was the increased secretion of IgA antibody, which is a product of the specific immune response. An interesting question for future research is whether this effect is part of a larger nonspecific protein release in the oral cavity in response to acute stress (cf. Bosch et al., 2002).

It bears noting that a number of the findings presented in are accompanied by significant heterogeneity statistics. To identify moderating variables that might explain some of this heterogeneity, we examined whether effect sizes varied according to demographic characteristics of the sample (mean age and percentage female) or features of the acute challenge (its duration and nature). Neither of the demographic characteristics showed a consistent relationship with immune outcomes. Although these findings suggest that acute time-limited stressors elicit a similar pattern of immune response for men and women across the life span, this conclusion needs to be viewed somewhat cautiously given the narrow range of ages found in these studies. We also did not find a consistent pattern of relationships between features of the acute challenge and immune outcomes. Acute stressors elicited similar patterns of immune change across a wide spectrum of durations ranging from 5 though 100 min and irrespective of whether they involved social (e.g., public speaking), cognitive (e.g., mental arithmetic), or experiential (e.g., parachute jumping) forms of stressful experience.

presents the meta-analysis of brief naturalistic stressors for medically healthy adults. The vast majority of these stressors (k = 60; 95.2%) involved students facing academic examinations. In contrast to the acute time-limited stressors, examination stress did not markedly affect the number or percentage of cells in peripheral blood. Instead, the largest effects were on functional parameters, particularly changes in cytokine production that indicate a shift away from cellular immunity (Th1) and toward humoral immunity (Th2). Brief stressors reliably changed the profile of cytokine production via a decrease in a Th1-type cytokine, IFN (r = .30), which stimulates natural and cellular immune functions, and increases in the Th2-type cytokines IL-6 (r = .26), which stimulates natural and humoral immune functions, and IL-10 (r = .41), which inhibits Th1 cytokine production. Note that IFN and IL-6 share the property of stimulating natural immunity but differentially stimulate cytotoxic versus inflammatory effector mechanisms. Their dissociation after brief naturalistic stress indicates differential effects between Th1 and Th2 responses rather than natural and specific responses.

Meta-Analysis of Immune Responses to Brief Naturalistic Stress in Healthy Participants

The functional assay data are consistent with this suggestion of suppression of cellular immunity via decreased Th1 cytokine production: The T cell proliferative response significantly decreased with brief stressors (r = .19 to .32), as did natural killer cell cytotoxicity (r = .11). Increased antibody production to latent virus, particularly Epstein-Barr virus (r = .20), is also consistent with suppression of cellular immunity, enhancement of humoral immunity, or both.

There was also evidence that age contributed to vulnerability to stress-related immune change during brief naturalistic stressors, even within a limited range of relatively young ages. When we examined whether effect sizes varied according to demographic characteristics of the sample, sex ratio did not show a consistent pattern of relations with immune processes. However, the mean age of the sample was strongly related to study effect size. To the extent that a study enrolled participants of older ages, it was likely to observe more pronounced decreases in natural killer cell cytotoxicity (r = .58, p = .04; k = 14), T lymphocyte proliferation to the mitogens PHA (r = .58, p = .04; k = 13) and ConA (r = .31, p = .38; k = 9), and production of the cytokine IFN (r = .63, p = .09; k = 8) in response to brief naturalistic stress. The strength of these findings is particularly surprising given the narrow range of ages found in studies of brief natural stress; the mean participant age in this literature ranged from 15.7 to 35.0 years.

We also calculated effect sizes for three studies examining the effects of examination stress on individuals with asthma (see ). These three studies, all emanating from a team of investigators at the University of WisconsinMadison, found that stress reliably increased superoxide release (r = .20 to .37) and decreased natural killer cell cytotoxicity (r = .33). Because natural killer cells are stimulated by Th1 cytokines, this change is consistent with a Th1-to-Th2 shift. However, stress also reliably increased T cell proliferation to PHA (r = .32), which is not consistent with such a shift. The generally larger effect sizes are consistent with the idea that individuals with immunologically mediated disease are more susceptible to stress-related immune dysregulation, but the reversed sign for T cell proliferation also indicates that that pattern of dysregulation may also be more disorganized. That is, the organized pattern of suppression of Th1 but not Th2 immune responses in healthy individuals undergoing brief stressors may reflect regulation in the healthy immune system. In contrast, the lack of regulation in a diseased immune system may lead to more chaotic changes during stressors.

Meta-Analysis of Immune Responses to Brief Naturalistic Stress in Participants With Asthma

The meta-analysis of stressful event sequences is presented in . With the exception of significant increases in the number of circulating natural killer cells and the number of antibodies to the latent Epstein-Barr virus, the findings indicate that stressful event sequences are not associated with reliable immune changes. For many immune outcomes, however, significant heterogeneity statistics are evident. Studies of healthy adults generally fell into two categories that yielded disparate patterns of immune findings. The largest group of studies focused on the death of a spouse as a stressor and, as such, used samples consisting primarily of older women. Collectively, these studies found that losing a spouse was associated with a reliable decline in natural killer cell cytotoxicity (r = .23, p = .01; k = 6) but not with alterations in stimulated-lymphocyte proliferation by the mitogens ConA (r = .04, p = .45; k = 4), PHA (r = .01, p = .93; k = 7), or PWM (r = .08, p = .76; k = 3) or with changes in the number of T-helper lymphocytes (r = .07, p = .52; k = 6) or T-cytotoxic lymphocytes (r = .13, p = .45; k = 5) in peripheral blood. The next largest group of studies in this area examined immune responses to disasters, which may have different neuroendocrine consequences than loss; whereas loss is generally associated with increases in cortisol, trauma may be associated with decreases in cortisol (Yehuda, 2001; Yehuda, McFarlane, & Shalev, 1998). Natural disaster samples tended to focus on middle-aged adults of both sexes who were direct victims of the disaster, rescue workers at the scene, or personnel at nearby medical centers. There were medium-size effects suggesting increases in natural killer cell cytotoxicity (r = .25, p = .53; k = 4) and stimulated-lymphocyte proliferation by the mitogen PHA (r = .26, p = .33; k = 2), as well as decreases in the number of T-helper lymphocytes (r = .20, p = .43; k = 2) and T-cytotoxic lymphocytes (r = .23, p = .55; k = 2) in the circulation. However, none of them was statistically significant because of the small number of studies involved, and therefore these effects should be considered suggestive but not reliable.

Meta-Analysis of Immune Responses to Stressful Event Sequences in Healthy Participants

An additional group of studies in this area examined immune responses to a positive initial biopsy for breast cancer in primarily middle-aged female participants before and after the procedure. The three studies of this nature did not yield a consistent pattern of relations with any of the immune outcomes.

In summary, stressful event sequences did not elicit a robust pattern of immune changes when considered as a whole. When these sequences are broken down into categories reflecting the stressors nature, the meta-analysis yields evidence of declines in natural immune response following the loss of a spouse, nonsignificant increases in natural and specific immune responses following exposure to natural disaster, and no immune alterations with breast biopsy. Unfortunately, we cannot determine whether these disparate patterns of immune response are attributable to features of the stressors, demographic or medical characteristics of the participants, or some interaction between these factors.

Chronic stressors included dementia caregiving, living with a handicap, and unemployment. Like other nonacute stressors, they did not have any systematic relationship with enumerative measures of the immune system. They did, however, have negative effects on almost all functional measures of the immune system (see ). Both natural and specific immunity were negatively affected, as were Th1 (e.g., T cell proliferative responses) and Th2 (e.g., antibody to influenza vaccine) parameters. The only nonsignificant change was for antibody to latent virus; this effect size was substantial (r = .44), but there was also substantial heterogeneity. Further analyses showed that demographics did not moderate this effect: Immune responses to chronic stressors were equally strong across the age spectrum as well as across sex.

Meta-Analysis of Immune Responses to Chronic Stress in Healthy Participants

Distant stressors were traumatic events such as combat exposure or abuse occurring years prior to immune assessment. The meta-analytic results for distant stressors appear in . The only immune outcome that has been examined regularly in this literature is natural killer cell cytotoxicity, and it is not reliably altered in persons who report a distant traumatic experience.

Meta-Analysis of Immune Responses to Distant Stressors and Posttraumatic Stress Disorder in Healthy Participants

Most of the studies in this area examined whether immune responses varied as a function of the number of life events a person endorsed on a standard checklist, a persons rating of the impact of those events, or both. As illustrates, this methodology yielded little in the way of significant outcomes in healthy participants. To determine whether vulnerability to life events might vary across the life span, we divided studies into two categories on the basis of a natural break in the age distribution. These analyses provided evidence that older adults are especially vulnerable to life-eventinduced immune change. In studies that used samples of adults who had a mean age above 55, life events were associated with reliable declines in lymphocyte-proliferative responses to PHA (r = .40, p = .05; k = 2) and natural killer cell cytotoxicity (r = .59, p = .001; k = 2). These effects were much weaker in studies with a mean age below 55: Life events were not associated with proliferative responses to PHA (r = .22, p = .24; k = 2), and showed a reliable but modest relationship with natural killer cell cytotoxicity (r = .10, p = .03; k = 8). The differences in effect size between older and younger adults were statistically significant for natural killer cell cytotoxicity ( p < .001) but not PHA-induced proliferation ( p <.15). None of the other moderators we examinedsex ratio, kind of life event assessed (daily hassle vs. major event), or the method used to do so (checklist vs. interview)was related to immune outcomes.

Meta-Analysis of Immune Responses to Major and Minor Life Events of Unknown Duration in Healthy Participants

presents the relationship between life events and immune parameters in participants with HIV/AIDS. The presence of life events was associated with a significant reduction in the number of natural killer cells and a marginal reduction in the number of T-cytotoxic lymphocytes. It is unrelated to the number of T-helper lymphocytes, the percentage of T-cytotoxic lymphocytes, and the T-helper:T-cytotoxic ratio, all of which are recognized indicators of disease progression for patients with HIV/AIDS.

Meta-Analysis of Immune Responses to Major and Minor Life Events of Unknown Duration in Participants With HIV/AIDS

We have already proposed that immunological disease diminishes the resilience and self-regulation of the immune system, making it more vulnerable to stress-related disruption, and this may be the case in HIV-infected versus healthy populations. However, studies of HIV-infected populations also utilized more refined measures of life events (interviews that factor in biographical context) than did studies of healthy populations (typically, checklist measures). Unfortunately, we cannot differentiate between these explanations on the basis of the available data.

The meta-analysis of stress appraisals and intrusive thoughts is displayed in . These studies generally enrolled large populations of adults who were not experiencing any specific form of stress and examined whether their immune responses varied according to stress appraisals and/or intrusive thoughts. This methodology was unsuccessful at documenting immune changes related to stress. Because of the small number of studies in this category, moderator analyses could not be performed.

Meta-Analysis of Immune Responses to Global Stress Appraisals in Healthy Participants

The meta-analysis results shown in address a similar question with regard to persons who are in the midst of a specific event sequence or a chronic stressor. To the extent that they appraise their lives as stressful or report the occurrence of intrusive thoughts, these individuals exhibit a significant reduction in natural killer cell cytotoxicity. Although this effect does not extend to the number of T-helper and T-cytotoxic lymphocytes in the circulation, it suggests that a persons subjective representation of a stressor may be a determinant of its impact on the immune response.

Meta-Analysis of Immune Responses to Stress Appraisals and Intrusive Thoughts Within Healthy Stressed Populations

The large number of effect sizes generated by the meta-analysis raises the possibility of Type I error. One strategy for evaluating this concern involves dividing the number of significant findings in a meta-analysis by the total number of analyses conducted. When we performed this calculation, a value of 25.6% emerged, suggesting that more than one fourth of the analyses yielded reliable findings. This exceeds the 5% value at which investigators typically become concerned about Type I error rates and gives us confidence that the meta-analytic findings presented here are robust.

A second concern arises from the publication bias toward positive findings, which could skew meta-analytic results toward larger effect sizes. Fortunately, recent advances in meta-analysis enable one to evaluate the extent of this publication bias by using graphical techniques. A funnel plot can be drawn in which effect sizes are plotted against sample sizes for any group of studies. Because most studies in any given area have small sample sizes and therefore tend to yield more variable findings, the plot should end up looking like a funnel, with a narrow top and a wide bottom. If there is a bias against negative findings in an area, the plot is shifted toward positive values or a chunk of it will be missing entirely.

We drew funnel plots for all of the immune outcomes in the meta-analysis for which there were a sufficient number of observations. Although not all of them yielded perfect funnels, there was no systematic evidence of publication bias. Space limitations prevent us from including all plots; however, displays three plots that are prototypical of those we drew. As is evident from the data in the figure, psychoneuroimmunology researchers seem to be reporting positive and negative findingsand not hiding unfavorable outcomes when they do emerge. Thus, we do not have any major concerns about publication bias leading this meta-analysis to dramatically overestimate effect sizes.

Funnel plots depicting relationship between effect size and sample size. PHA = phytohemagglutinin.

The immune system, once thought to be autonomous, is now known to respond to signals from many other systems in the body, particularly the nervous system and the endocrine system. As a consequence, environmental events to which the nervous system and endocrine system respond can also elicit responses from the immune system. The results of meta-analysis of the hundreds of research reports generated by this hypothesis indicate that stressful events reliably associate with changes in the immune system and that characteristics of those events are important in determining the kind of change that occurs.

Selyes (1975) seminal findings suggested that stress globally suppressed the immune system and provided the first model for how stress and immunity are related. This model has recently been challenged by views that relations between stress and the immune system should be adaptive, at least within the context of fight-or-flight stressors, and an even newer focus on the balance between cellular and humoral immunity. The present meta-analytic results support three of these models. Depending on the time frame, stressors triggered adaptive upregulation of natural immunity and suppression of specific immunity (acute time-limited), cytokine shift (brief naturalistic), or global immunosuppression (chronic).

When stressors were acute and time-limitedthat is, they generally followed the temporal parameters of fight-or-flight stressorsthere was evidence for adaptive redistribution of cells and preparation of the natural immune system for possible infection, injury, or both. In evolution, stressor-related changes in the immune system that prepared the organisms for infections resulting from bites, puncture wounds, scrapes, or other challenges to the integrity of the skin and blood could be selected for. This process would be most adaptive when it was also efficient and did not divert excess energy from fight-or-flight behavior. Indeed, changes in the immune system following acute stress conformed to this pattern of efficiency and energy conservation. Acute stress upregu-lated parameters of natural immunity, the branch of the immune system in which most changes occurred, which requires only minimal time and energy investment to act against invaders and is also subject to the fewest inhibitory constraints on acting quickly (Dopp et al., 2000; Sapolsky, 1998). In contrast, energy may actually be directed away from the specific immune response, as indexed by the decrease in the proliferative response. The specific immune response in general and proliferation in particular demand time and energy; therefore, this decrease might indicate a redirection away from this function. Similar redirection occurs during fight-or-flight stressors with regard to other nonessential, future-oriented processes such as digestion and reproduction. As stressors became more chronic, the potential adaptiveness of the immune changes decreased. The effect of brief stressors such as examinations was to change the potency of different arms of specific immunityspecifically, to switch away from cellular (Th1) immunity and toward humoral (Th2) immunity.

The stressful event sequences tended to fall into two substantive groups: bereavement and trauma. Bereavement was associated with decreased natural killer cell cytotoxicity. Trauma was associated with nonsignificantly increased cytotoxicity and increased proliferation but decreased numbers of T cells in peripheral blood. The different results for loss and trauma mirror neuroendocrine effects of these two types of adverse events. Lossmaternal separation in nonhuman animals and bereavement in humansis commonly associated with increased cortisol production (Irwin, Daniels, Risch, Bloom, & Weiner, 1988; Laudenslager, 1988; McCleery, Bhagwagar, Smith, Goodwin, & Cowen, 2000). In contrast, trauma and posttraumatic stress disorder are commonly associated with decreased cortisol production (see Yehuda, 2001; Yehuda et al., 1998, for reviews). To the degree that cortisol suppresses immune function such as natural killer cell cytotoxicity, these results have the potential to explain the different effects of loss and trauma event sequences.

The most chronic stressors were associated with the most global immunosuppression, as they were associated with reliable decreases in almost all functional immune measures examined. Increasing stressor duration, therefore, resulted in a shift from potentially adaptive changes to potentially detrimental changes, initially in cellular immunity and then in immune function more broadly. It is important to recognize that although the effects of chronic stressors may be due to their duration, the most chronic stressors were associated with changes in identity or social roles (e.g., acquiring the role of caregiver or refugee or losing the role of employee). These chronic stressors may also be more persistent, that is, constantly rather than intermittently present. Finally, chronic stressors may be less controllable and afford less hope for control in the future. These qualities could contribute to the severity of the stressor in terms of both its psychological and physiological impact.

Increasing stressor chronicity also impacted the type of parameter in which changes were seen. Compared with the natural immune system, the specific immune system is time and energy intensive and as such is expected to be invoked only when circumstances (either a stressor or an infection; cf. Maier & Watkins, 1998) persist for a longer period of time. Affected immune domainsnatural versus specificwere consistent with the duration of the stressorsacute versus chronic. Furthermore, changing immune responses via redistribution of cells can happen much faster than changes via the function of cells. The time frames of the stressor and the immune domain were also consistent; acute stress affected primarily enumerative measures, whereas stressors of longer duration affected primarily functional measures.

The results of these analyses suggest that the dichotomization of the immune system into natural and specific categories and, within specific immunity, into cellular and humoral measures, is a useful starting point with regard to understanding the effects of stressors. Categorizing an immune response is a difficult process, as each immune response is highly redundant and includes natural, specific, cellular, and humoral immune responses acting together. Given this redundancy, the differential results within these theoretical divisions were remarkably, albeit not totally, consistent. As further immunological research defines these divisions more subtly, the results with regard to stressors may become even clearer. However, the present results suggest that the categories used here are meaningful.

The results of this meta-analysis reflect the theoretical and empirical progress of this literature over the past 4 decades. Increased differentiation in the quality of stressors and the immunological parameters investigated have allowed complex models to be tested. In contrast, previous meta-analyses were bound by a small number of more homogenous studies. Herbert and Cohen (1993) reported on 36 studies published between 1977 and 1991, finding broadly immunosuppressive effects of stress. Zorrilla et al. (2001) reported on 82 studies published between 1980 and 1996, finding potentially adaptive effects of acute stressors in addition to evidence for immunosuppression with longer stressors. It is important to note that meta-analytic findings are bound by the models tested in the literature. As more complex models are tested, more complex relationships emerge in meta-analysis. We next consider some such areas of complexity that should be considered in future psychoneuroimmunology research.

The meta-analytic results indicate that organismic variables such as age and disease status moderate vulnerability to stress-related decreases in functional immune measures. Both aging and HIV are associated with immune senescence and loss of responsiveness (Effros et al., 1994; Effros & Pawelec, 1997), and both are also associated with disruption of neuroendocrine inputs to the immune system (Kumar et al., 2002; Madden, Thyagarajan, & Felten, 1998). The loss of self-regulation in disease and aging likely makes affected people more susceptible to negative immunological effects of stress. Finally, the meta-analysis did not reveal effects of sex on immune responses to stressors. However, these comparisons simply correlated the sex ratio of the studies with effect sizes. Grouping data by sex would afford a more powerful comparison, but few studies organized their data that way. Gender may moderate the effects of stress on immunity by virtue of the effects of sex hormones on immunity; generally, men are considered to be more biologically vulnerable (Maes, 1999), and they may be more psychosocially vulnerable (e.g.,Scanlan, Vitaliano, Ochs, Savage, & Borson, 1998).

It seems likely to us that individual differences in subjective experience also make a substantive contribution to explaining this phenomenon. Studies have convincingly demonstrated that peoples cardiovascular and neuroendocrine responses to stressful experience are dependent on their appraisals of the situation and the presence of intrusive thoughts about it (Baum et al., 1993; Frankenhauser, 1975; Tomaka et al., 1997). Although the same logic should apply to peoples immune responses to stressful experience, few of the studies in this area have included measures of subjective experience, and those reports were limited by methodological issues such as aggregation across heterogeneous stressors. As a consequence, measures of subjective experience were not significantly associated with immune parameters in healthy research participants, with the exception of a modest (r = .10) relationship between intrusive thoughts and natural killer cell cytotoxicity. Psychological variables such as personality and emotion can give rise to individual differences in psychological and concomitant immunological responses to stress. Optimism and coping, for example, moderated immunological responses to stressors in several studies (e.g., Barger et al., 2000; Bosch et al., 2001; Cruess et al., 2000; Segerstrom, 2001; Stowell, Kiecolt-Glaser, & Glaser, 2001).

Virtually nothing is known about the psychological pathways linking stressors with the immune system. Many theorists have argued that affect is a final common pathway for stressors (e.g., S. Cohen, Kessler, & Underwood, 1995; Miller & Cohen, 2001), yet studies have enjoyed limited success in attempting to explain peoples immune responses to life experiences on the basis of their emotional states alone (Bower et al., 1998; Cole, Kemeny, Taylor, Visscher, & Fahey, 1996; Miller, Dopp, Myers, Stevens, & Fahey, 1999; Segerstrom, Taylor, Kemeny, & Fahey, 1998). Furthermore, many studies have focused on the immune effects of emotional valence (e.g., unhappy vs. happy; Futterman, Kemeny, Shapiro, & Fahey, 1994), but the immune system may be even more closely linked to emotional arousal (e.g., stimulated vs. still), especially during acute stressors (S. Cohen et al., 2000). Finally, it is possible that emotion will prove to be relatively unimportant and that other mental processes such as motivational states or cognitive appraisals will prove to be the critical psychological mechanisms linking stress and the immune system (cf. Maier, Waldstein, & Synowski, 2003).

In terms of biological mechanisms, the field is further along, but much remains to be learned. A series of studies in the mid-1990s was able to show via beta-adrenergic blockade that activation of the sympathetic nervous system was responsible for the immune system effects of acute stressors (Bachen et al., 1995; Benschop, Nieuwenhuis, et al., 1994). Apart from these findings, however, little is known about biological mechanisms, especially with regard to more enduring stressors that occur in the real world. Studies that have attempted to identify hormonal pathways linking stressors and the immune system have enjoyed limited success, perhaps because they have utilized snapshot assessments of hormones circulating in blood. Future studies can maximize their chances of identifying relevant mediators by utilizing more integrated measures of hormonal output, such as 24-hr urine collections or diurnal profiles generated through saliva collections spaced throughout the day (Baum & Grunberg, 1995; Stone et al., 2001).

Future studies could also benefit from a greater emphasis on behavior as a potential mechanism. This strategy has proven useful in studies of clinically depressed patients, in which decreased physical activity and psychomotor retardation (Cover & Irwin, 1994; Miller, Cohen, & Herbert, 1999), increased body mass (Miller, Stetler, Carney, Freedland, & Banks, 2002), disturbed sleep (Cover & Irwin, 1994; Irwin, Smith, & Gillin, 1992), and cigarette smoking (Jung & Irwin, 1999) have been shown to explain some of the immune dysregulation evident in this population. There is already preliminary evidence, for instance, that sleep loss might be responsible for some of the immune system changes that accompany stressors (Hall et al., 1998; Ironson et al., 1997).

The most pressing question that future research needs to address is the extent to which stressor-induced changes in the immune system have meaningful implications for disease susceptibility in otherwise healthy humans. In the 30 years since work in the field of psychoneuroimmunology began, studies have convincingly established that stressful experiences alter features of the immune response as well as confer vulnerability to adverse medical outcomes that are either mediated by or resisted by the immune system. However, with the exception of recent work on upper respiratory infection (S. Cohen, Doyle, & Skoner, 1999), studies have not yet tied these disparate strands of work together nor determined whether immune system changes are the mechanism through which stressors increase susceptibility to disease onset. In contrast, studies of vulnerable populations such as people with HIV have shown changes in immunity to predict disease progression (Bower et al., 1998).

To test an effect of this nature, researchers need to build clinical outcome assessments into study designs where appropriate. For example, chronic stressors reliably diminish the immune systems capacity to produce antibodies following routine influenza vaccinations (see ). Yet as far as we are aware, none of these studies has tracked illness to explore whether stress-related disparities in vaccine response might be sufficient to heighten susceptibility to clinical infection with influenza. Cytokine expression represents a relatively new and promising example of an avenue for research linking stress, immune change, and disease. For example, chronic stress may elicit prolonged secretion of cortisol, to which white blood cells mount a counterregulatory response by downregulating their cortisol receptors. This downregulation, in turn, reduces the cells capacity to respond to anti-inflammatory signals and allows cytokine-mediated inflammatory processes to flourish (Miller, Cohen, & Ritchey, 2002). Stress therefore might contribute to the course of diseases involving excessive nonspecific inflammation (e.g., multiple sclerosis, rheumatoid arthritis, coronary heart disease) and thereby increase risk for excess morbidity and mortality (Ershler & Keller, 2000; Papanicoloaou et al., 1998; Rozanski, Blumenthal, & Kaplan, 1999). Another example of the importance of cytokines to clinical pathology is in asthma and allergy, in which emerging evidence implicates excess Th2 cytokine secretion in the exacerbation of these diseases (Busse & Lemanske, 2001; Luster, 1998).

Sapolsky (1998) wrote,

Stress-related disease emerges, predominantly, out of the fact that we so often activate a physiological system that has evolved for responding to acute physical emergencies, but we turn it on for months on end, worrying about mortgages, relationships, and promotions. (p. 7)

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Psychological Stress and the Human Immune System: A Meta ...

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Human nutrition, the gut microbiome, and immune system …

Thursday, August 4th, 2016

Nature. Author manuscript; available in PMC 2012 Mar 9.

Published in final edited form as:

PMCID: PMC3298082

NIHMSID: NIHMS360404

Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63108

*Contributed equally

1Current address: Section of Microbial Pathogenesis and Microbial Diversity Institute, Yale School of Medicine, New Haven CT 06536

Dramatic changes in socioeconomic status, cultural traditions, population growth, and agriculture are affecting diets worldwide. Understanding how our diet and nutritional status influence the composition and dynamic operations of our gut microbial communities, and the innate and adaptive arms of our immune system, represents an area of scientific need, opportunity and challenge. The insights gleaned should help address a number of pressing global health problems.

A number of reviews have appeared recently about efforts to decipher the interactions between the innate and adaptive immune system and the tens of trillions of microbes that live in our gastrointestinal tracts (the gut microbiota). Here we emphasize how the time is right and the need is great to better understand the interrelationships between diet, nutritional status, the immune system and microbial ecology in humans at different stages of life, living in distinct cultural and socioeconomic settings. Why now? The answer lies in a confluence of forces occurring at the present time that will affect the future. First, there is enormous pressure to devise new ways to feed healthy foods to a human population whose size is predicted to expand to 9 billion by 2050. At the same time, the solutions will have to address the challenges of developing sustainable forms of agriculture in the face of constrained land and water resources 1. Second, there is a great need to develop new translational medicine pipelines for more rigorously defining the nutritional value of foods we consume currently and that we envision creating in the future. These pipelines are required to evaluate health claims made about food ingredients. Third, there is increasing evidence that the nutritional value of food is influenced in part by the structure and operations of a consumers gut microbial community, and that food in turn shapes the microbiota and its vast collection of microbial genes (the gut microbiome) (e.g. ref 2). Therefore, to better define the nutritional value of foods and our nutritional status, we need to know more about our microbial differences and their origins, including how our lifestyles influence the assembly of gut microbial communities in children, and about the transmission of these communities within and across generations of a kinship 3. Fourth, we are learning how our gut microbial communities and immune systems co-evolve during our lifespans and how components of the microbiota impact the immune system. At the same time, we are obtaining more information about how our overall metabolic phenotypes (metabotypes) reflect myriad functions encoded in our human genomes and gut microbiomes. These observations raise the question of how gut microbial community metabolism of the foods we consume affects our immune systems. Fifth, the link between infections that occur within and outside the gut, and the development of nutritional deficiencies has been emphasized for many years. Poor nutrition in turn, increases the risk for infection. Nonetheless, there is still a dearth of mechanistic information that explains these observations. Sixth, only five years remain to achieve the UNs eight Millennium Development Goals (http://www.undp.org/mdg/). Two of these goals relate to human nutrition: goal 1 seeks to eradicate extreme poverty and hunger while goal 4 aims to reduce by two thirds the under-five mortality rate. Up to one billion people suffer from undernutrition of varying degrees, including silent or asymptomatic malnutrition (http://www.fao.org/publications/sofi/en/), making this condition an enormous global health problem. Of the ~10 million children under the age of 5 who die each year, undernutrition contributes in some fashion to >50% of deaths 4. Sadly, children who survive periods of severe undernutrition can suffer long-term sequelae including stunting and neurodevelopmental deficits 5. Moreover, the effects of undernutrition can be felt across generations. Undernourished mothers suffer higher rates of morbidity and mortality and are more likely to give birth to low birth weight children who in turn have increased risk for developing type 2 diabetes, hypertension, dyslipidemia, cardiovascular pathology, and obesity as adults 6. One testable hypothesis is that the gut microbiota may contribute to the risk and pathogenesis of undernutrition through effects on nutrient metabolism and on immune function (). Similarly, does the experience of undernutrition in childhood affect the development of metabolic capacities by this microbial organ in ways that result in persistent metabolic dysfunction or inadequate function, thereby contributing to the sequelae of malnutrition? Finally, if we define malnutrition as the inadequate or excessive consumption of dietary ingredients leading to development of disease, then we need to also consider the alarming epidemic of obesity that is sweeping the world and its relationship to the gut microbiome and immune system.

A schematic of envisioned interrelationships between the gut microbiota, the immune system and diet that underlies the development of malnutrition

We believe that the marriage of two approaches, one involving culture-independent (metagenomic) methods for describing the gut microbiota/microbiome and the other involving gnotobiotics (the rearing of animals under germ-free conditions, with or without subsequent exposure at various stages of postnatal life or adulthood to a microbial species or species consortium) represents a potentially powerful way to address a number of questions related to the interrelationships between diet, nutritional status, the assembly and dynamic operations of gut microbial communities, and the nature of the interkingdom communications between the gut microbiota and host (including host-microbial co-metabolism, and the co-evolution of the immune system2,7,8). Without dismissing caveats related to the use of gnotobiotic models (see below), we describe ways that may be useful for joining gnotobiotics and metagenomic methods to compare and contrast the functional properties of various types of gut microbial communities, to explicitly test or generate hypotheses, and to develop new experimental (and computational) approaches that together inform the design, execution, and interpretation of human studies.

Changes in dietary consumption patterns affect many aspects of human biology. A full understanding of the determinants of nutritional status requires that we know what people are eating and how these diets are changing. Unfortunately, accurate information of this type is hard to obtain and when available generally covers a relatively limited time period. As a corollary, searchable databases that effectively integrate information obtained from the surveillance efforts of many international and national organizations (e.g., WHO, the UN Food and Agriculture Organization, the United States Department of Agriculture (USDA) Economic Research Service) are needed to monitor changing patterns of food consumption in different human populations. Analysis of USDA data tracking the availability of over 200 common food items between 1970 and 2000 reveals that diets in the USA have changed both in terms of overall caloric intake and the relative amounts of different food items (http://www.ers.usda.gov/Data/FoodConsumption). Linear regression of total caloric intake over time shows that the average number of kcal consumed per day increased markedly over this 30-year period (R2=0.911, P<1015). This is consistent with estimates from the US National Health and Nutrition Examination Survey (NHANES), which indicate that adult men and women increased their daily calorie intake by 6.9% and 21.7%, respectively, during the same period 9. If total caloric intake is analogous to primary productivity in macro-ecosystems, where primary productivity is used as a proxy for available energy, then increasing the amount of energy input from the diet would be predicted to affect the number of microbial species living in the gut of a single host, as well as the magnitude of the compositional differences that exist between different hosts or even different regions of a single gut (for discussions about the mechanisms underlying productivity-species richness relationships in macro-ecosystems see refs. 10,11). Intriguingly, metagenomic studies of bacterial composition in the fecal microbiota of obese and lean twin pairs living in the USA have shown that obesity is associated with decreased numbers of bacterial species 3. Reductions in diversity could impact community function, resilience to various disturbances, and the host immune system.

During the past 30-plus years, the American diet has also shifted in terms of the relative contributions of different foods to total energy intake. Since 1970, two dietary epochs can be distinguished based on the contribution of grains to overall calories (mean increase in daily carbohydrate intake for men and women during this period, 62.4g and 67.7g, respectively9). Consumption of other food items has also changed: Spearmans rank correlations between food availability and time, followed by adjustments of p-values to reflect false discovery rates, reveal that the representation of 177 of 214 items tracked by the USDA has either increased or decreased significantly in American diets since 1970. For example, Americans now eat less beef and more chicken, and corn-derived sweeteners have increased at the expense of cane and beet sugars. Additionally, methods of food modification and preparation have changed. Comparable data are needed for other countries with distinct cultural traditions, including countries where people are undergoing dramatic transformations in their socioeconomic status and lifestyles.

We know from metagenomic studies of the human gut microbiota and microbiome that (i) early postnatal environmental exposures play a very important role in determining the overall phylogenetic structure of an adult human gut microbiota, (ii) assembly of the microbiota towards an adult configuration occurs during the first three years of life 12, and (iii) features of the organismal and gene content of gut communities are shared among family members and transmitted across generations of a kinship 3. We also know that dietary habits influence the structure of the human genome. For example, populations that consume diets high in starch have a higher number of copies of the salivary amylase gene (AMY1) than those consuming low-starch diets 13. We know that these habits also affect the gut microbiome. A wonderful illustration of the latter point is the acquisition of a -porphyranase gene that degrades seaweed-associated glycans from marine microbes associated with non-sterile food consumed by Japanese populations. Zobellia galactanivorans is a marine Bacteroidetes that is able to process porphyran derived from marine red algae belonging to the genus Porphyra. Homologs of porphyranases from Z. galactanivorans are present in the human gut bacterium Bacteroides plebeius and prominently represented in the gut microbiomes of Japanese but not North Americans, leading to the suggestion that porphyranases from Z. galactanivorans or another related bacterium were acquired, perhaps through horizontal gene transfer, by a resident member of the microbiota of Japanese consumers of non-sterile food, and that this organism and gene was subsequently transmitted to others in Japanese society14. Together, these observations lead to the notion that systematic changes in overall dietary consumption patterns across a population might lead to changes in the microbiota/microbiome with consequences for host nutritional status and immune responses.

We also know from work in gnotobiotic mice that have received human fecal microbial community transplants that the relative abundances of different bacterial species and genes in the gut microbiota are highly sensitive to the proportions of different foods in the diet 2. Gnotobiotic mice harboring defined collections of sequenced human gut symbionts or transplanted human fecal microbial communities could provide an approach for modeling the effects of different dietary epochs on the gut microbiota and on different facets of host biology. If the desired result is an account of the effects of individual food items or nutrients, then feeding the animals a series of defined diets, each with a different element removed or added might be an appropriate strategy if the food ingredients for the epoch are known and available. If the focus is on the effects of overall differences in dietary habits within or between groups of humans, then diets should reflect the overall nutritional characteristics of the different groups without merely being representative of a single individual. Designing such diets requires detailed accounts of the identity and quantity of each food item consumed, ideally for a large number of people, as well as the methods used for food preparation. The American diet presents a rare opportunity for such an approach, as NHANES datasets (http://www.cdc.gov/nchs/tutorials/Dietary/) provide one-day dietary recall data at multiple timepoints dating back to the early 1970s.

The nexus between nutrient metabolism and the immune system occurs at many levels, ranging from endocrine signaling to direct sensing of nutrients by immune cells. Leptin provides a case study of features of these complex interrelationships. Leptin serves to regulate appetite and is a pleiotropic cytokine, maintaining thymic output and cellularity, and promoting the dominance of Th1 cells over Th2 cells 15,16 while inhibiting the proliferation of T regulatory cells (Tregs) 17. Low levels of leptin may account for the decreased cellular immunity associated with periods of nutrient deprivation 16. Leptin also impacts innate immune cells, ranging from promotion of neutrophil activation and migration to activation of monocytes and macrophages 15. Elegant experiments using mice deficient in the leptin receptor in different cellular compartments traced a requirement for leptin signaling in intestinal epithelial cells for preventing severe disease following exposure to Entamoeba histolytica. Comparisons of db/db mice that lack a functional leptin receptor and their wild-type littermates revealed that leptin controls infectivity and prevents severe inflammatory destruction of the intestine, thereby impacting mortality 18. These studies were extended to mice with engineered mutations in the leptin receptor that are found in human populations (T1138S and T985L, both of which disrupt signaling), Each of these mutations rendered mice more susceptible to E. histolytica infection 18. Leptin levels are significantly reduced in the sera of germ-free mice 19. Moreover, genetically obese leptin-deficient ob/ob mice have marked differences in the taxonomic and gene content of their gut microbial communities 20. To our knowledge, the effects of leptin-receptor deficiency on the gut microbiota have not been reported. Nonetheless, leptin receptor deficiency and E. histolytica pathogenesis provide a setting where the intersections between the endocrine and immune systems, enteric infection, and gut microbial ecology can be explored.

The ability to use macronutrients is essential for the generation and maintenance of a protective effector immune response. Following TCR stimulation and co-stimulation through CD28, the metabolic needs of T cells are met by a dramatic increase in uptake and utilization of glucose, amino acids and fatty acids 21,22. A deficiency in glucose uptake negatively impacts numerous facets of T cell function with impairment of both proliferation and cytokine expression. Similarly, deficiencies in amino acids such as tryptophan arginine, glutamine and cysteine reduce immune activation. Furthermore, TCR stimulation in the absence of co-stimulation, which leads to T cell anergy, has been linked to a failure to upregulate metabolic machinery associated with amino acid and iron uptake 21,22.

Short chain fatty acids (SCFAs) provide one of the clearest examples of how nutrient processing by the microbiota and host diet combine to shape immune responses. SCFAs are end-products of microbial fermentation of macronutrients, most notably plant polysaccharides that cannot be digested by humans alone because our genomes do not encode the large repertoire of glycoside hydrolases and polysaccharide lyases needed to cleave the varied glycosidic linkages present in these glycans 23. These missing enzymes (dining utensils) are provided by the microbiome. The luminal concentration of intestinal SCFAs can be modified by the amount of fiber in the diet: this in turn affects the composition of the microbiota 24. In addition to acting as an energy source for the host, SCFAs exert significant effects on host immune responses. Butyrate can modify the cytokine production profile of helper T cells 25 and promote intestinal epithelial barrier integrity 26, which in turn can help limit exposure of the mucosal immune system to luminal microbes and prevent aberrant inflammatory responses. Production of another SCFA, acetate, by the microbiota promotes the resolution of intestinal inflammation via the G protein-coupled receptor, Gpr43 27. A recent study highlighted the important role of acetate production in preventing infection with the enteropathogen, E. coli 0157:H7. This effect was linked to its ability to maintain gut epithelial barrier function 28. Intriguingly, acetylation of lysine residues may be regulated by SCFA 29 and appears to affect proteins involved in a variety of signaling and metabolic processes. The role of this covalent modification in modulating the activity of proteins intimately involved in innate and adaptive immune responses needs to be explored. It is tempting to speculate that covalent or non-covalent linkage of a variety products of microbial metabolism to host proteins produced within the intestine, or at extra-intestinal sites, will be discovered and found to have important regulatory effects. These different protein modifications could represent a series of mechanisms by which microbial community metabotype is imprinted on the host.

If nutrients and derived metabolites reflect the functional activity of the microbiota, sensors of nutrient/metabolite availability can be considered akin to microbe-associated molecular patterns (MAMPs) that convey information regarding microbes to the host. Several families of innate receptors are involved in recognition of MAMPs: they include Toll-like receptors (TLRs), inflammasomes, C-type lectins such as dectin-1, and RNA-sensing RIG-like helicases such as RIG-I and MDA5. The accompanying review by Maloy and Powrie in this issue provides an overview of this area. Here we would like to emphasize that classical innate immune recognition pathways have evolved to assess the nutrient environment. TLR4 can sense the presence of free fatty acids 30 while ATP is in important activator of the inflammasome 31. A variety of other immune cell-associated sensors serve to couple information about the local nutrient/metabolite environment to the co-ordination of local immune responses. Examples include mTOR (mammalian Target Of Rapamycin), a serine/threonine kinase32, PKR (double stranded RNA-activated protein kinase) 33, the aryl hydrocarbon receptor (AhR) 34, and various nuclear hormone receptors such as liver-X-receptor (LXR) and peroxisome-proliferator activated receptors (PPAR-, , ) 35 ( and ). The mTOR pathway represents an example of how energy availability impacts immune responses. mTOR is activated by PI3 kinase and AKT activity and is inhibited by AMP-activated protein kinase (AMPK), which is a sensor of cellular energy resources. Genetic and pharmacologic approaches (the latter using rapamycin) indicate that mTOR-signaling affects both the innate and adaptive arms of the immune system, including maturation and effector activity of dendritic cells (DCs), inhibition of Treg development, promotion of the differentiation of Th1, Th2 and Th17 cells, regulation of CD8+ T cell trafficking, and inhibition of memory T cell formation 32,36. PKR couples the presence of free fatty acids to immune activation and has been implicated in the pathogenesis of obesity in mice fed a high fat diet, including their immunoinflammatory and insulin-resistant phenotypes 33 (see below). AhR is activated by a variety of agonists, including kynurenine, a product of tryptophan metabolism by indolamine-2,3-dioxygenase (IDO) 37,38. AhR modulates the differentiation of DCs 39 as well as promoting Th17 and Treg differentiation and effector activity 40,41. Withdrawal of tryptophan and arginine controls immune responses 42,43. The presence of an intact amino acid starvation (AAS) response in T cells is essential for the immunosuppressive activity of tryptophan depletion by IDO 44. This example illustrates how the ability of T-cells to sense levels of a nutrient (tryptophan) in its local environment, rather than using the nutrient solely as a fuel source, is an important determinant of cell fate. If assessment of local nutrient levels or metabolites is an important feature in the immune decision-making process, and if the products of microbial metabolism represent heretofore unappreciated agonists or antagonists of immune cell receptors, then an important challenge is to devise in vitro and in vivo models, including genetically manipulatable gnotobiotic animals (e.g., mice or zebrafish) to identify the array of metabolites produced by a microbiota (and host) as a function of different defined diets.

Metabolic sensors that help co-ordinate immune responses

The intestinal microbiota has the capacity to synthesize a variety of vitamins involved in myriad aspects of microbial and host metabolism, including cobalamin (vitamin B12), pyridoxal phosphate (active form of vitamin B6), a cofactor in a variety of enzymatic interconversions involved in amino acid metabolism, pantothenic acid (vitamin B5), niacin (vitamin B3), biotin, tetrahydrofolate (generated from dietary forms of folate) and vitamin K. In addition to vitamin B12, gut microbes produce a range of related molecules (corrinoids) with altered lower ligands including methyladenine, p-cresol, and other analogs. Over 80% of non-absorbed dietary vitamin B12 is converted to these alternate corrinoids 45,46. There is preliminary evidence that syntrophic relationships among members of the human microbiota, and the fitness of some taxa, may be based on the ability to generate, utilize, or further transform various corrinoids46,47.

The ability of the gut microbiota to produce folate and cobalamin could affect host DNA methylation patterns, while acetate produced from microbial fermentation of polysaccharides could modify chromatin structure and gene transcription via histone acetylation. Thus, inheritance of a mammalian genotype, intergenerational transmission of a microbiome, together with a complex dynamic where the microbiome is viewed both as an epigenome per se and as a modifier of the host epigenome during the postnatal period when host, host diet and microbial community co-evolve, could together shape human physiological phenotypes that are manifest during childhood or later in life.

Numerous observational studies indicate that deficiencies in vitamins A, D, E and zinc can adversely impact immune function, particularly T-cell responses. Although a significant body of work exists detailing the myriad effects of vitamin A, D and E on host immune responses, to date there is little evidence for a role of the microbiota in the biosynthesis or metabolism of these vitamins. However, stimulation of dendritic cells via TLR2 increases the expression of host genes associated with generation of the immunoactive form of vitamin A (retinoic acid) while enteric infection has been linked to vitamin A deficiency 48,49. Intriguingly, a recent study demonstrated that vitamin A deficiency leads to a complete loss of Th17 cells in the small intestine of specified pathogen-free mice, and an associated significant reduction in the abundance of segmented filamentous bacteria (SFB) 50, a member of the Clostridiaceae that drives intestinal Th17 responses in mice 51,52. Thus, vitamin A has the potential to modulate immune responses through direct interactions with immune cells, or indirectly by modulating the composition of the microbiota.

The microbiota also affects the absorption of key minerals. Perhaps the best characterized micronutrient in terms of its interaction with both the microbiota and immune system is iron. Iron-deficient mice are resistant to the development of experimental autoimmune encephalomyelitis, and have reduced delayed type hypersensitivity responses and lower levels of IgM and IgG. Iron deficiency also impairs innate immune responses, as it is required for the respiratory burst 53. Likewise, iron is an essential micronutrient for bacteria. Given the low solubility of Fe3+, microbes have evolved the capacity to produce a variety of high affinity iron-binding siderophores.. Microbes take up soluble Fe3+ siderophore complexes via a variety of active transporters. Early studies in gnotobiotic animals revealed a link between the gut microbiota and development of iron deficiency. Germ-free but not conventionally-raised rats become anemic when fed a low iron diet. Germ-free rats also exhibit increased loss of iron in their feces compared to their conventionally-raised counterparts 54. The iron balance that exists between host and microbiota is disturbed in a mouse model of Crohns disease where there is dysregulation of TNF- expression: oral (but not parenteral) iron supplementation in these animals causes a shift in gut microbial community composition, as defined by 16S rRNA-based surveys, and exacerbates their ileitis 55.

Metagenomic methods need to be applied to further delineate the role of the microbiota in iron and other forms of micronutrient deficiency. For example, what is the impact of developing iron deficiency on the configuration of the gut microbiota and microbiome, including its content of siderophores? Does iron repletion return the microbiota/microbiome to a normal pre-deficient state, or are there persistent structural and functional perturbations that require continued nutritional supplementation to correct? Do particular configurations of the microbiota/microbiome predispose the host to iron or other types of micronutrient deficiency? How does the iron content of mothers milk during post-natal life impact the assembly and metabolic operations of the microbiota? In principle, these questions can be first addressed in a variety of gnotobiotic mouse models, and also extended to macronutrient-deficient states.

Obesity, metabolic syndrome and diabetes illustrate the role the diet-microbiota-immune axis plays in shaping human systems biology. Although the dramatic increase in obesity worldwide can be linked to an ever-growing trend towards excessive calorie intake, the microbiota has also been implicated in this disorder. Studies of a cohort of twins living in the USA indicate that the bacterial phylogenetic composition of the fecal microbiota and the representation of microbial genes involved in several aspects of nutrient metabolism in the fecal microbiome are different in lean versus obese twin pairs 3. Different groups applying different primers for amplifying bacterial 16S rRNA genes for culture-independent analyses of gut microbial ecology, and studying different human populations consuming different diets have reported differing results concerning the bacterial phylogenetic composition of the microbiota in lean versus obese individuals 56.

Evidence that a link exists between the microbiota and obesity comes from transplant experiments in gnotobiotic mice: gut communities from leptin-deficient ob/ob mice or mice with diet-induced obesity produce a greater increase in adiposity when transferred to germ-free recipients than do communities from wild-type littermates or mice that have been given a healthy calorically less dense diet 20,57. Germ-free mice are resistant to diet-induced obesity. Additional studies have revealed that the gut microbial community regulates expression of genes that affect fatty acid oxidation and fat deposition in adipocytes. For example, production of the secreted lipoprotein lipase inhibitor angipoietin-like protein 4 (Angptl4; also known as fasting-induced adipose factor) is suppressed by the microbiota: studies of germ-free and conventionalized wild-type and Angptl4/ animals established that microbiota-mediated suppression of gut epithelial expression of this secreted LPL inhibitor results in increased LPL activity and fat storage in white adipose tissue 19,58. TLR5-deficient mice harbor a gut microbiota with a configuration distinct from that encountered in littermate controls. Moreover, when their gut microbiota is transplanted to wild-type germ-free recipients, food intake is increased compared to recipients of microbiota transplants from wild-type mice: increased adiposity and hyperglycemia ensue 59. The mechanism underlying the increase in food consumption remains to be defined although the authors of this study speculate that inflammatory signaling may desensitize insulin signaling in ways that lead to hyperphagia.

Obesity in mice and humans is associated with infiltration of adipose tissue by macrophages, CD8+ T cells 60, and CD4+ T cells 61,62 expressing inflammatory cytokines and chemokines such as TNF-, CCL2, IL-6, IFN- and IL-17 60,62,63. In contrast, adipose tissue in lean mice is home to a population of immunosuppressive regulatory T cells (Treg) that serve to prevent inflammation 64. Mice deficient in the chemokine receptor CCR2 and with obesity induced by consumption of a high-fat diet have reduced macrophage infiltration of the adipose tissue and improved glucose tolerance relative to CCR2-sufficient controls 60, highlighting the role played by factors recruiting inflammatory immune cells and their associated pro-inflammatory products in the pathogenesis of metabolic abnormalities associated with obesity. Blockade of TNF- 65 or expanding Tregs using anti-CD3 mAbs 62 serves to prevent the onset of obesity-associated insulin resistance in a mouse model of diet-induced obesity.

Inflammation drives development of insulin resistance through phosphorylation of insulin receptor 1 (IRS1) via TNF- activated JNK, IKK-, protein kinase C (PKC) or mTOR activity 60. Although MyD88 signals promote development of type 1 diabetes in specified pathogen-free NOD (non-obese diabetic) mice, germ-free MyD88 deficient NOD animals are susceptible to this disorder 66. These findings suggest that particular intestinal microbial configurations can promote or prevent inflammatory immune responses that drive metabolic dysfunction.

Mice fed a high fat diet have increased serum LPS 67. Furthermore, genetically obese mice deficient in leptin or its receptor have reduced intestinal barrier function 68. As noted above, SCFA produced by microbial fermentation affect barrier function. Thus, it will be important to assess whether or not obese humans display similar reductions in barrier function: one scenario is that a high fat diet alters the structure of the intestinal microbiota leading to a reduction in intestinal barrier integrity, enhanced translocation of microbes and/or their antigens resulting in increased microbial antigen load at extra-intestinal sites, enhanced immune stimulation, and the development of insulin-resistance. Furthermore, nutrients are known to directly activate inflammatory arms of the immune system 69. The capacity of the intestinal microbiota to shape immune responses outside of intestine is well documented. Studies have highlighted the ability of the microbiota and specifically SFB to support the development of autoimmune arthritis 70 and experimental allergic encephalomyelitis 71, both of which have been linked to excessive Th17 responses.

Unfortunately, we have scant knowledge of the spatial relationships between members of the microbiota as well as their proximity to elements of the gut-associated immune system in healthy individuals, or individuals with mucosal barrier dysfunction. Gnotobiotic mouse models of obesity may help provide important insights about the biogeography of microbial communities along the length and width of the gut, including whether microbial consortia occupy ectopic sites that could impact the development and perpetuation of barrier dysfunction (e.g., in the crypts of Lieberkuhn where multipotential gut stem cells reside as described in the accompanying article by Medema and Vermeulen). Newer methods, such as CLASI-FISH 72, offer a great deal of promise for characterizing the spatial features of microbe-microbe and microbe-host cell interactions in the gut mucosa, especially if they are applied to gnotobiotic models.

Undernutrition can have a variety of clinical manifestations ranging from mild asymptomatic micronutrient deficiencies to severe, life-threatening conditions such as kwashiorkor or marasmus. Estimates are that implementing current best practice interventions, including lengthening the time of breastfeeding, supplementing diets with zinc and vitamins, improving handwashing and other hygiene measures, and optimizing treatment of acute severe malnutrition, could reduce mortality during the first three years of life by only 25%, even if there is near perfect compliance 5. While a variety of environmental and genetic factors have long been postulated to influence the development of moderate to severe forms of malnutrition 73, the underlying mechanisms remain poorly defined. Food availability, while certainly a major factor, is not the only contributor. For example, in Malawi, the concordance for severe malnutrition between twins within the same household and fed similar diets is only 50% (M. Manary, personal communication). This observation raises a number of questions. Do different configurations of the microbiota predispose one co-twin to kwashiorkor or marasmus? What is the impact of nutrient deficiency, in either the mother or her child, on the configuration of the gut microbiota and microbiome in the developing gut? Does nutrient deficiency in the mother impact the assembly of the microbiota via changes in the mothers gut microbiota or in the nutrient and immune content of her breast milk: both the microbiota and milk are transmitted to the infant yet we have much to learn about how the biochemical and immunologic features of breast-milk change and how breast milk and infant microbiota co-evolve during the suckling period when a mother is healthy or when she is malnourished (see below). If malnutrition delays the maturation of the guts microbial metabolic organ or skews it towards a different and persistent configuration that either lacks necessary functions for health or that expresses functions that may increase the risk for disease, including immunoinflammatory disorders, does nutrient repletion return the microbiota/microbiome to a normal pre-deficient state, or are there persistent structural and functional perturbations that require continued nutritional supplementation to correct? Are there microbiome configurations that correlate with vaccine responsiveness 74?

Studies of severe forms of malnutrition indicate that these patients often have many characteristics of environmental enteropathy 75. Environmental enteropathy, also known as tropical sprue or tropical enteropathy, is a poorly characterized chronic inflammatory disease that primarily affects the small intestine. This disorder afflicts individuals who reside for relatively long periods of time in areas with poor sanitation and who have high exposure to fecal-contaminated water and food. As an example, Peace Corps volunteers returning to the USA from such areas would report a history of diarrheal disease and have signs and symptoms of chronic malabsorption and nutritional deficiencies 76. The malabsorption associated with environmental enteropathy is often subtle, manifesting itself clinically only as stunting due to chronic undernutrition 76. The breakdown in intestinal mucosal barrier function in this disorder can lead to increased susceptibility to enteropathogen infections. Recurrent infections predispose to nutritional deficiencies and further compromise of barrier function, leading to a vicious cycle of further susceptibility to infection and worsening nutritional status77.

Efforts to break this cycle have focused on vaccines that could prevent infection. However, there is significant heterogeneity in the responses to vaccination between children living in highly Westernized societies and children living in certain developing countries. Oral rotavirus vaccine elicits responses in >95% of children living in Westernized societies but only 49% in Malawi 78. Lower oral polio vaccine (OPV) efficacy has been reported in populations with greater enteric disease burden 79. Studies in Chilean children have demonstrated a negative correlation between oral cholera vaccine responses and small bowel bacterial overgrowth 80. In addition, patients with celiac disease, which as noted below, shares phenotypic features with environmental enteropathy, can have a blunted response to parenteral hepatitis B vaccination, but only when their disease is active 81.

Traditionally, the most definitive test for environmental enteropathy has been small intestinal biopsy. Biopsies typically show reductions in small intestinal villus height, increased numbers of intraepithelial lymphocytes, and increased infiltration of the underlying lamina propria by T cells with a predominant Th1 phenotype 75. Some of these features are found in patients with celiac disease, where a luminal antigen (gliadin) drives a T-cell response that, in turn, results in epithelial destruction, reduced absorptive surface area, and malabsorption 76. Unlike celiac disease, the antigens that drive the host immune response in environmental enteropathy are unknown, but there may be an association with certain HLA alleles (e.g., Aw-31 82).

The pathologic events that lead to the development of environmental enteropathy are poorly understood, in part because of the absence of a robust set of readily assayed biomarkers that would improve the ability to diagnose, classify and potentially subcategorize individuals that exhibit the broadly defined clinical manifestations which define this disorder. Epidemiologic data showing a strong association of environmental enteropathy in areas with poor sanitation, occasional epidemic spread of the disease and its responsiveness to antibiotic treatment reinforce the long-standing belief that there is an infectious etiology. While cultures of jejunal aspirates from individuals with environmental enteropathy have suggested contamination of the proximal small bowel by aerotolerent Gram-negative bacteria 83, no single pathogen or set of pathogens has been identified in the gut microbiota of the majority of affected individuals. There is a distinct possibility that this enteropathy is not the result of a single pathogen but rather the result of colonization with microbial consortia that are inflammogenic in the context of a susceptible host. In fact, what constitutes a normal immune repertoire in a healthy gut likely varies considerably depending upon environmental exposures and the configuration of a microbiota. Moreover, most metagenomic studies of the microbiota have focused on members of the domain Bacteria that dominate these communities. Additional tools need to be developed so that they can be extended to viral and eukaryotic components. The latter include parasites that compete for nutrients within the intestines of infected individuals. Parasites can interact directly with bacterial members of the microbiota during their life cycle in ways that promote hatching of parasite eggs, and can shape immune function through factors such as excretory-secretory (ES) products which have been shown to modulate cytokine production, basophil degranulation, immune cell recruitment and interference with TLR signaling 84.

It seems reasonable to posit that individuals living in regions with high oral exposures to fecal contaminated water and foods, and/or with a eukaryotic component of their gut community that includes parasites, will have gut associated-immune systems with significantly different structural and functional configurations than those without these exposures. In this sense, including the term environmental together with enteropathy is logical and emphasizes the need to place a hosts immune and gut microbiome phenotypes in the context of their various exposures.

Comparative metagenomic studies could provide important new diagnostic tools in the form of microbial taxa, and microbiome gene functions whose representation in the gut communities of affected individuals versus healthy controls correlates with environmental enteropathy. In addition, they could provide pathophysiological insights about relationships between host diet, enteropathogen representation in the microbiota, and microbiome gene composition and expression (including expressed metabolic functions). A major challenge will be to correlate this data with the results of quantitative phenotyping of the human guts innate and adaptive immune system. This will require new and safe approaches for sampling system components, especially in the gut mucosa. Similarly, as noted above, we have scant knowledge of the spatial relationships between members of the microbiota, as well as their proximity to elements of the gut-associated immune system in healthy individuals or in individuals with mucosal barrier dysfunction.

Breast milk is known to protect newborns from infection, in part because of the copious amount of maternally generated antibodies that it contains. While these antibodies have specificity for components of the microbiota, the microbial targets are not well defined for given maternal- infant dyads, or as a function of time after delivery. In addition to antibodies, breast milk contains other immunoactive compounds including cytokines (e.g., IL-10), growth factors (e.g., EGF) and antimicrobial enzymes such as lysozyme. The impact of maternal nutritional status on the glycan, protein, lipid and cytokine landscape of breast milk needs to be defined further. This analysis should have a temporal axis that explores co-evolution of the immunological/nutrient properties of mothers milk and the postnatal assembly and maturation of the infant gut microbiota and of the innate and adaptive immune system. Important feedback systems may be revealed. Similarly, knowledge of the vaginal and cutaneous microbiota of mothers prior to and following birth, as a function of their nutritional status could be very informative. For example, are there common configurations of microbial communities occupying these body habitats that correlate with the development of environmental enteropathy in mothers and their offspring?

As noted above, studies have demonstrated the ability of intestinal microbial communities to rapidly re-shape themselves in response to changes in diet. These observations raise the question of whether and how malnourished states impact (i) the spatial/functional organization of the microbiota and the niches (professions) of its component members; (ii) the capacity of the community to respond to changes in diet; (iii) the ability of components of the microbiota to adaptively forage on host-derived mucosal substrates, and (iv) the physical and functional interactions that occur between the changing microbial communities and the intestinal epithelial barrier (including its overlying mucus layer). One way of developing the experimental and computational tools and concepts needed to examine these challenging questions in humans is to turn to gnotobiotic mice who have been humanized by transplantation of gut communities from human donors with distinct physiological phenotypes and to feed these mice diets that are representative of those of the microbiota donor.

We have used metagenomic methods to show that gut (fecal) communities can be efficiently transplanted into germ-free mice and the mice then fed diets that resemble those consumed by the human microbiota donors, or diets whose ingredients are deliberately manipulated in various ways 2. Transplanted human gut microbial communities can be transmitted from gnotobiotic mothers to their pups. In principle, by using mice humanized with microbiota from individuals residing in different regions of the world, and giving them diets that are representative of their cultural traditions, proof-of-principle global clinical trials of the nutritional value of foods and their impact on the microbiota and immune system can be performed.

Transplantation of a human fecal microbiota into germ-free mice can be viewed as capturing an individuals microbial community at a moment in time and replicating it in multiple recipient gut ecosystems. The humanized mice can be followed over time under highly controlled conditions where potentially confounding variables can be constrained in ways that are not achievable in human studies. This type of personalized gnotobiotics also provides an opportunity to determine the degree to which human phenotypes can be transmitted via the gut microbiota as a function of diet. Moreover, the documented responses of microbial lineages and genes encoding metabolic pathways in the transplanted, replicated communities may provide mechanistic insights about differences in the adaptations of healthy versus diseased gut microbiomes (and host immune system) to changes in diets, plus new biomarkers of nutritional status and the impact of various therapeutic interventions, including those based on dietary manipulations. Putative microbial biomarkers obtained from studies of these mice can in turn be used to query datasets generated directly from the human donor(s).

Despite the potential power of using humanized mice to study interactions between the host immune and metabolic systems and the intestinal microbiota under highly controlled conditions, this approach has caveats. Recent work on Th17 responses suggests that unlike the mouse microbiota, which contains SFB, a fecal microbiota from a human donor is not sufficient to drive immune-gene expression in the small intestine of ex-germ free mice52. This raises the possibility that humanization may not fully recapitulate the capacity of a mouse microbiota to mature the intestinal immune system in mice. However, earlier studies on the effects of human microbiota on the mouse immune system revealed that the ability of E. coli heat labile enterotoxin (LT) to break oral tolerance to ovalbumin in germ-free mice can be inhibited by transplantation of either a human or mouse microbiota during the neonatal period 85. Further, a single component of a human gut symbiont, the polysaccharide A component of B. fragilis, is able to mature components of the CD4+ T cell response in mice 86. Finally, we have observed a similar increase in the frequency of TCR-+ cells in the mesenteric lymph nodes of gnotobiotic recipients of a human or mouse microbiota, when compared to germ-free controls (P. Ahern, V. Ridaura and J. Gordon, unpublished observations). This suggests that although not all components of the immune system will be matured by a human gut microbiota, the immune system is not likely to remain ignorant of these communities. In addition, any differences detected in direct comparisons of the effects of two different human communities may represent responses relevant to the human immune system.

We have recently shown that the human fecal microbiota consists largely of bacteria that can readily be cultured87. Metagenomic analysis suggests that the majority of predicted functions in a humans microbiome are represented in its cultured members. In gnotobiotic mice, both complete and cultured communities exhibit similar properties and responses to dietary manipulations. By changing the diet of the host, the community of cultured microbes can be shaped so that it becomes enriched for taxa suited to that diet. These culture collections of anaerobes can be clonally arrayed in multi-well formats: this means that personalized, taxonomically defined culture collections can be created from donors representing different human populations and physiologic phenotypes, and where the microbes have co-evolved and co-existed together within a single human beings gut habitat.

Together, these advances yield a translational medicine pipeline for examining the interplay between food and food ingredients, the microbiota, the immune system and health. Goals for such a human translational medicine pipeline are to (i) identify individuals with interesting phenotypes, (ii) assess transmissibility of their phenotypes via human microbiota transplants into gnotobiotic animals, (iii) select candidate disease-modifying taxa (retrieved from clonally-arrayed, taxonomically defined personal bacterial culture collections), (iv) sequence selected taxa and (v) reunite them in various combinations in gnotobiotic mice as defined model gut communities, so that their interactions with one another and their impact on host biology can be further explored, using a variety of methods [e.g., RNA-Seq, mass-spec based proteomics and metabolomics, multi-label FISH (for biogeographical studies of the microbiota), whole genome transposon mutagenesis (to identify fitness factors for microbes under various dietary contexts 46), immune profiling and other measurements of mucosal barrier function]. Knowing the degree to which tractable bacterial taxa are able to influence host physiology, and how dietary components can be used to affect specific organisms in the microbiota in ways that provide benefit to the host may be very useful for discovering new generations of pro- and prebiotics.

With massive prospective national surveys planned and being implemented, such as the NIHs National Childrens Study that will follow a representative sample of 100,000 children from before birth to age 21, the time is right for an initiative to evaluate the interrelationships between our diets, nutritional status, microbiomes and immune systems. Many components could comprise this initiative. We can readily envision several of these.

As noted above, there is a need to create more and improved databases for monitoring changing patterns of food consumption that integrates the surveillance efforts of a number of organizations. This tool and other interdisciplinary approaches could be used to define a set of study populations representative of established and emerging food consumption patterns in distinct cultural and socioeconomic settings. An emphasis could be placed on comparing humans living in Westernized societies versus those living in developing countries undergoing marked transitions in lifestyles/cultural traditions. New, reliable, cost-effective and generalizable methods will be needed for acquiring quantitative data about the diets consumed by individual humans in these study populations, and the resulting data deposited in searchable databases together with defined annotation standards. Moreover, guidelines need to be further developed related to ethical and legal aspects of human subjects research involving observational and interventional nutritional studies of pregnant women and their offspring.

Readily procured human biospecimens could be used together with high throughput, targeted and nontargeted (quantitative) profiling of metabolites in comprehensive time series studies to define the relationship between diet, nutritional status, and microbiome configuration in healthy individuals at various stages of life (e.g., in women before, during and after pregnancy and in their children during the first 5 years after birth). This could be accompanied by studies of malnourished individuals before, during and after well justified, defined nutritional interventions. In addition to these data, genomes (genotypes), epigenomes and microbiomes could be characterized in these study cohorts together with a variety of clinical parameters (e.g., vaccine responses) and environmental parameters (e.g., water sanitation). The resulting datasets would be deposited in annotated searchable databases. A translational medicine pipeline that includes relevant cellular and animal models would help guide the design and interpretation of these human studies.

As noted above, a major challenge is to obtain cellular and molecular biomarkers for quantitative profiling of the innate and adaptive immune system, including biomarkers of mucosa-associated barrier function. Given the small quantities of biomaterials available from some body sites, this initiative should help advance enabling miniaturizing technology for quantitative measurements of cells and biofluids. Non-invasive imaging-based biomarkers are also needed.

Aspirational goals include identifying new host and microbial biomarkers and mediators of nutritional status, the nutritional value of various foods, the functioning of the human adaptive/innate immune system (including mucosal barrier integrity and mucosal immunity), and the dynamic operations of the microbiota. This information would be used for demonstration projects that rigorously define nutritional health and test preventive or therapeutic recommendations for micro- and macronutrient consumption, for example in pregnant women and infants/children, and their impact on the assembly and operations of their immune systems. The microbiome component could also help define a previously uncharacterized axis of human genetic evolution (our microbiome-evolution) reflecting in part our changing dietary habits. It could also produce testable hypotheses about unappreciated aspects of the pathophysiology of Western diseases, and yield new microbiome-based strategies for disease prevention or treatment.

We are grateful to members of our lab, plus our colleagues Clay Semenkovich and Andrey Shaw, for many helpful discussions. Work cited from our laboratory was supported by grants from the NIH (DK30292, DK70977, DK078669), the Crohns and Colitis Foundation of America, and the Bill and Melinda Gates Foundation.

1. Whitacre PT, Fagen AP, Husbands JL, Sharples FE. Implementing the New Biology: Decadal Challenges Linking Food, Energy, and the Environment. National Research Council of The National Academies of Science; Washington, D.C.: 2010.

11. Mittelbach GG, et al. What is the observed relationship between species richness and productivity? Ecology. 2001;82:23812396.

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Human nutrition, the gut microbiome, and immune system ...

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Gut flora – Wikipedia, the free encyclopedia

Thursday, August 4th, 2016

Gut flora (gut microbiota, or gastrointestinal microbiota) is the complex community of microorganisms that live in the digestive tracts of humans and other animals, including insects. The gut metagenome is the aggregate of all the genomes of gut microbiota.[1] The gut is one niche that human microbiota inhabit.[2]

In humans, the gut microbiota has the largest numbers of bacteria and the greatest number of species compared to other areas of the body.[3] In humans the gut flora is established at one to two years after birth, and by that time the intestinal epithelium and the intestinal mucosal barrier that it secretes have co-developed in a way that is tolerant to, and even supportive of, the gut flora and that also provides a barrier to pathogenic organisms.[4][5]

The relationship between gut flora and humans is not merely commensal (a non-harmful coexistence), but rather a mutualistic relationship.[2]:700 Human gut microorganisms benefit the host by collecting the energy from the fermentation of undigested carbohydrates and the subsequent absorption of short-chain fatty acids (SCFAs), acetate, butyrate, and propionate.[3][6] Intestinal bacteria also play a role in synthesizing vitamin B and vitamin K as well as metabolizing bile acids, sterols, and xenobiotics.[2][6] The systemic importance of the SCFAs and other compounds they produce are like hormones and the gut flora itself appears to function like an endocrine organ,[6] and dysregulation of the gut flora has been correlated with a host of inflammatory and autoimmune conditions.[3][7]

The composition of human gut flora changes over time, when the diet changes, and as overall health changes.[3][7]

The microbial composition of the gut flora varies across the digestive tract. In the stomach and small intestine, relatively few species of bacteria are generally present.[8][9] The colon, in contrast, contains a densely-populated microbial ecosystem with up to 1012 cells per gram of intestinal content.[8] These bacteria represent between 300 and 1000 different species.[8][9] However, 99% of the bacteria come from about 30 or 40 species.[10] As a consequence of their abundance in the intestine, bacteria also make up to 60% of the dry mass of feces.[11]Fungi, archaea, and viruses are also present in the gut flora, but less is known about their activities.[12]

Over 99% of the bacteria in the gut are anaerobes, but in the cecum, aerobic bacteria reach high densities.[2] It is estimated that these gut flora have around a hundred times as many genes in aggregate as there are in the human genome.[13]

Many species in the gut have not been studied outside of their hosts because most cannot be cultured.[9][10][14] While there are a small number of core species of microbes shared by most individuals, populations of microbes can vary widely among different individuals.[15] Within an individual, microbe populations stay fairly constant over time, even though some alterations may occur with changes in lifestyle, diet and age.[8][16] The Human microbiome project has set out to better describe the microflora of the human gut and other body locations.

The four dominant phyla in the human gut are Firmicutes, Bacteroidetes, Actinobacteria, and Proteobacteria.[17] Most bacteria belong to the genera Bacteroides, Clostridium, Faecalibacterium,[8][10]Eubacterium, Ruminococcus, Peptococcus, Peptostreptococcus, and Bifidobacterium.[8][10] Other genera, such as Escherichia and Lactobacillus, are present to a lesser extent.[8] Species from the genus Bacteroides alone constitute about 30% of all bacteria in the gut, suggesting that this genus is especially important in the functioning of the host.[9]

The currently known genera of fungi of the gut flora include Candida, Saccharomyces, Aspergillus, and Penicillium.

Archaea constitute another large class of gut flora which are important in the metabolism of the bacterial products of fermentation.

An enterotype is a classification of living organisms based on its bacteriological ecosystem in the human gut microbiome not dictated by age, gender, body weight, or national divisions.[18] There are indications that long-term diet influences enterotype.[19] Three human enterotypes have been discovered.[18][20]

Due to the high acidity of the stomach, most microorganisms cannot survive. The main bacterial inhabitants of the stomach include: Streptococcus, Staphylococcus, Lactobacillus, Peptostreptococcus, and types of yeast.[2]:720Helicobacter pylori is a Gram-negative spiral organism that establishes on gastric mucosa causing chronic gastritis and peptic ulcer disease and is a carcinogen for gastric cancer.[2]:904

The small intestine contains a trace amount of microorganisms due to the proximity and influence of the stomach. Gram positive cocci and rod shaped bacteria are the predominant microorganisms found in the small intestine.[2] However, in the distal portion of the small intestine alkaline conditions support gram-positive bacteria of the Enterobacteriaceae.[2] The bacterial flora of the small intestine aid in a wide range of intestinal functions. The bacterial flora provide regulatory signals that enable the development and utility of the gut. Overgrowth of bacteria in the small intestine can lead to intestinal failure.[21] In addition the large intestine contains the largest bacterial ecosystem in the human body.[2] Factors that disrupt the microorganism population of the large intestine include antibiotics, stress, and parasites.[2]

Bacteria make up most of the flora in the colon[22] and 60% of the dry mass of feces.[8] This fact makes feces an ideal source to test for gut flora for any tests and experiments by extracting the nucleic acid from fecal specimens, and bacterial 16S rRNA gene sequences are generated with bacterial primers. This form of testing is also often preferable to more invasive techniques, such as biopsies. Somewhere between 300[8] and 1000 different species live in the gut,[9] with most estimates at about 500.,[23][24] However, it is probable that 99% of the bacteria come from about 30 or 40 species, with Faecalibacterium prausnitzii being the most common species in healthy adults.[10][25]Fungi and protozoa also make up a part of the gut flora, but little is known about their activities.

Research suggests that the relationship between gut flora[26] and humans is not merely commensal (a non-harmful coexistence), but rather is a mutualistic, symbiotic relationship.[9] Though people can (barely) survive with no gut flora,[23] the microorganisms perform a host of useful functions, such as fermenting unused energy substrates, training the immune system via end products of metabolism like propionate and acetate, preventing growth of harmful species, regulating the development of the gut, producing vitamins for the host (such as biotin and vitamin K), and producing hormones to direct the host to store fats.[2]:713ff Extensive modification and imbalances of the gut microbiota and its microbiome or gene collection are associated with obesity.[27] However, in certain conditions, some species are thought to be capable of causing disease by causing infection or increasing cancer risk for the host.[8][22]

It has been demonstrated that there are common patterns of microbiome composition evolution during life.[29] In general, the diversity of microbiota composition of fecal samples is significantly higher in adults than in children, although interpersonal differences are higher in children than in adults.[30] Much of the maturation of microbiota into an adult-like configuration happens during the three first years of life.[30]

As the microbiome composition changes, so does the composition of bacterial proteins produced in the gut. In adult microbiomes, a high prevalence of enzymes involved in fermentation, methanogenesis and the metabolism of arginine, glutamate, aspartate and lysine have been found. In contrast, in infant microbiomes the dominant enzymes are involved in cysteine metabolism and fermentation pathways.[30]

Studies and statistical analyses have identified the different bacterial genera in gut microbiota and their associations with nutrient intake. Gut microflora is mainly composed of three enterotypes: Prevotella, Bacteroides, and Ruminococcus. There is an association between the concentration of each microbial community and diet. For example, Prevotella is related to carbohydrates and simple sugars, while Bacteroides is associated with proteins, amino acids, and saturated fats. One enterotype will dominate depending on the diet. Altering the diet will result in a corresponding change in the numbers of species.[19]

Malnourished human children have less mature and less diverse gut microbiota than healthy children, and changes in the microbiome associated with nutrient scarcity can in turn be a pathophysiological cause of malnutrition.[31][32] Malnourished children also typically have more potentially pathogenic gut flora, and more yeast in their mouths and throats.[33]

Gut microbiome composition depends on the geographic origin of populations. Variations in trade off of Prevotella, the representation of the urease gene, and the representation of genes encoding glutamate synthase/degradation or other enzymes involved in amino acids degradation or vitamin biosynthesis show significant differences between populations from USA, Malawi or Amerindian origin.[30]

The US population has a high representation of enzymes encoding the degradation of glutamine and enzymes involved in vitamin and lipoic acid biosynthesis; whereas Malawi and Amerindian populations have a high representation of enzymes encoding glutamate synthase and they also have an overrepresentation of -amylase in their microbiomes. As the US population has a diet richer in fats than Amerindian or Malawian populations which have a corn-rich diet, the diet is probably a main determinant of gut bacterial composition.[30]

Further studies have indicated a large difference in the composition of microbiota between European and rural African children. The fecal bacteria of children from Florence were compared to that of children from the small rural village of Boulpon in Burkina Faso. The diet of a typical child living in this village is largely lacking in fats and animal proteins and rich in polysaccharides and plant proteins. The fecal bacteria of European children was dominated by Firmicutes and showed a marked reduction in biodiversity, while the fecal bacteria of the Boulpon children was dominated by Bacteroidetes. The increased biodiversity and different composition of gut flora in African populations may aid in the digestion of normally indigestible plant polysaccharides and also may result in a reduced incidence of non-infectious colonic diseases.[34]

On a smaller scale, it has been shown that sharing numerous common environmental exposures in a family is a strong determinant of individual microbiome composition. This effect has no genetic influence and it is consistently observed in culturally different populations.[30]

In humans, a gut flora similar to an adult's is formed within one to two years of birth.[4] The gastrointestinal tract of a normal fetus has been considered to be sterile, however recently it has been acknowledged that microbial colonisation may occur in the fetus.[35] During birth and rapidly thereafter, bacteria from the mother and the surrounding environment colonize the infant's gut.[4] As of 2013, it was unclear whether most of colonizing arise from the mother or not.[4] Infants born by caesarean section may also be exposed to their mothers' microflora, but the initial exposure is most likely to be from the surrounding environment such as the air, other infants, and the nursing staff, which serve as vectors for transfer.[36] During the first year of life, the composition of the gut flora is generally simple and it changes a great deal with time and is not the same across individuals.[4]

The initial bacterial population are generally facultative anaerobic organisms; investigators believe that these initial colonizers decrease the oxygen concentration in the gut, which in turn allows purely aneorobic bacteria like Bacteroides, Actinobacteria, and Firmicutes to become established and thrive.[4] Breast-fed babies become dominated by bifidobacteria, possibly due to the contents of bifidobacterial growth factors in breast milk.[37][38] In contrast, the microbiota of formula-fed infants is more diverse, with high numbers of Enterobacteriaceae, enterococci, bifidobacteria, Bacteroides, and clostridia.[39]

Bacteria in the gut fulfill a host of useful functions for humans, including digestion of unutilized energy substrates,[40] stimulating cell growth, repressing the growth of harmful microorganisms, training the immune system to respond only to pathogens, and defending against some diseases.[8][9][41]

Without gut flora, the human body would be unable to utilize some of the undigested carbohydrates it consumes, because some types of gut flora have enzymes that human cells lack for breaking down certain polysaccharides.[6] Rodents raised in a sterile environment and lacking in gut flora need to eat 30% more calories just to remain the same weight as their normal counterparts.[6] Carbohydrates that humans cannot digest without bacterial help include certain starches, fiber, oligosaccharides, and sugars that the body failed to digest and absorb like lactose in the case of lactose intolerance and sugar alcohols, mucus produced by the gut, and proteins.[3][6]

Bacteria turn carbohydrates they ferment into short-chain fatty acids (SCFAs)[10][24] by a form of fermentation called saccharolytic fermentation.[24] Products include acetic acid, propionic acid and butyric acid.[10][24] These materials can be used by host cells, providing a major source of useful energy and nutrients for humans,[24] as well as helping the body to absorb essential dietary minerals such as calcium, magnesium and iron.[8] Gases and organic acids, such as lactic acid, are also produced by saccharolytic fermentation.[10] Acetic acid is used by muscle, propionic acid helps the liver produce ATP, and butyric acid provides energy to gut cells and may prevent cancer.[24] Evidence also indicates that bacteria enhance the absorption and storage of lipids[9] and produce and then facilitate the body to absorb needed vitamins like vitamin K.

Another benefit of SCFAs is that they increase growth of intestinal epithelial cells and control their proliferation and differentiation.[8] They may also cause lymphoid tissue near the gut to grow. Bacterial cells also alter intestinal growth by changing the expression of cell surface proteins such as sodium/glucose transporters.[9] In addition, changes they make to cells may prevent injury to the gut mucosa from occurring.[41]

In humans, a gut flora similar to an adult's is formed within one to two years of birth.[4] As the gut flora gets established, the lining of the intestines - the intestinal epithelium and the intestinal mucosal barrier that it secretes - develop as well, in a way that is tolerant to, and even supportive of, commensurate microorganisms to a certain extent and also provides a barrier to pathogenic ones.[4] Specifically, goblet cells that produce the muscosa proliferate, and the mucosa layer thickens, providing an outside mucosal layer in which "friendly" microorganisms can anchor and feed, and an inner layer that even these organisms cannot penetrate.[4][5] Additionally, the development of gut-associated lymphoid tissue (GALT), which forms part of the intestinal epithelium and which detects and reacts to pathogens, appears and develops during the time that the gut flora develops and established.[4] The GALT that develops is tolerant to gut flora species, but not to other microorganisms.[4] GALT also normally becomes tolerant to food to which the infant is exposed, as well as digestive products of food, and gut flora's metabolites produced from food.[4]

The human immune system creates cytokines that can drive the immune system to produce inflammation in order to protect itself, and that can tamp down the immune response to maintain homeostasis and allow healing after insult or injury.[4] Different bacterial species that appear in gut flora have been shown to be able to drive the immune system to create cytokines selectively; for example Bacteroides fragilis and some Clostridia species appear to drive an anti-inflammatory response, while some segmented filamentous bacteria drive the production of inflammatory cytokines.[4][42] Gut flora can also regulate the production of antibodies by the immune system.[4][43] These cytokines and antibodies can have effects outside the gut, in the lungs and other tissues.[4]

The resident gut microflora positively control the intestinal epithelial cell differentiation and proliferation through the production of short-chain fatty acids. They also mediate other metabolic effects such as the syntheses of vitamins like biotin and folate, as well as absorption of ions including magnesium, calcium and iron.[16]Methanogenic archae such as Methanobrevibacter smithii are involved in the removal of end products of bacterial fermentation such as hydrogen.[2]

Altering the numbers of gut bacteria, for example by taking broad-spectrum antibiotics, may affect the host's health and ability to digest food.[44] Antibiotics can cause antibiotic-associated diarrhea (AAD) by irritating the bowel directly, changing the levels of gut flora, or allowing pathogenic bacteria to grow.[10] Another harmful effect of antibiotics is the increase in numbers of antibiotic-resistant bacteria found after their use, which, when they invade the host, cause illnesses that are difficult to treat with antibiotics.[44]

Changing the numbers and species of gut flora can reduce the body's ability to ferment carbohydrates and metabolize bile acids and may cause diarrhea. Carbohydrates that are not broken down may absorb too much water and cause runny stools, or lack of SCFAs produced by gut flora could cause the diarrhea.[10]

A reduction in levels of native bacterial species also disrupts their ability to inhibit the growth of harmful species such as C. difficile and Salmonella kedougou, and these species can get out of hand, though their overgrowth may be incidental and not be the true cause of diarrhea.[8][10][44] Emerging treatment protocols for C. difficile infections involve fecal microbiota transplantation of donor feces. (see Fecal transplant). Initial reports of treatment describe success rates of 90%, with few side effects. Efficacy is speculated to result from restoring bacterial balances of bacteroides and firmicutes classes of bacteria.[45]

Gut flora composition also changes in severe illnesses, due not only to antibiotic use but also to such factors as ischemia of the gut, failure to eat, and immune compromise. Negative effects from this have led to interest in selective digestive tract decontamination (SDD), a treatment to kill only pathogenic bacteria and allow the re-establishment of healthy ones.[46]

Antibiotics alter the population of the gastrointestinal (GI) tract microbiota, may change the intra-community metabolic interactions, modify caloric intake by using carbohydrates, and globally affects host metabolic, hormonal and immune homeostasis.[47]

Probiotics are microorganisms that are believed to provide health benefits when consumed.[48][49] With regard to gut flora, prebiotics are typically non-digestible, fiber compounds that pass undigested through the upper part of the gastrointestinal tract and stimulate the growth or activity of advantageous gut flora by acting as substrate for them.[24][50]

Synbiotics refers to food ingredients or dietary supplements combining probiotics and prebiotics in a form of synergism.[51]

The term "pharmabiotics" is used in various ways, to mean: pharmaceutical formulations (standardized manufacturing that can obtain regulatory approval as a drug) of probiotics, prebiotics, or synbiotics;[52] probiotics that have been genetically engineered or otherwise optimized for best performance (shelf life, survival in the digestive tract, etc.);[53] and the natural products of gut flora metabolism (vitamins, etc.).[54]

There is some evidence that treatment with some probiotic strains of bacteria may be effective in irritable bowel syndrome and chronic idiopathic constipation. Those organisms most likely to result in a decrease of symptoms have included:

Gram positive bacteria present in the lumen may be associated with extending the duration of relapse for ulcerative colitis.[56]

Women's gut microbiota change as pregnancy advances, with the changes similar to those seen in metabolic syndromes such as diabetes. The change in gut flora causes no ill effects. The newborn's gut biota resemble the mother's first-trimester samples. The diversity of the flora decreases from the first to third trimester, as the numbers of certain species go up.[58]

Weight loss initiates a shift in the bacteria phyla that compose gut flora. Specifically, Bacteroidetes increase nearly linearly as weight loss progresses.[59] While there is a high level of variation in bacteria species found among individual people, this trend is prominent and distinct in humans.[60]

Bacteria in the digestive tract can contribute to disease in various ways. The presence or overabundance of some kinds of bacteria may contribute to inflammatory disorders such as inflammatory bowel disease.[8] Additionally, metabolites from certain members of the gut flora may influence host signaling pathways, contributing to disorders such as obesity and colon cancer.[8] Alternatively, in the event of a breakdown of the gut epithelium, the intrusion of gut flora components into other host compartments can lead to sepsis.[8]

Some genera of bacteria, such as Bacteroides and Clostridium, have been associated with an increase in tumor growth rate, while other genera, such as Lactobacillus and Bifidobacteria, are known to prevent tumor formation.[8]

As the liver is fed directly by the portal vein, whatever crosses the intestinal epithelium and the intestinal mucosal barrier enters the liver, as do cytokines generated there.[61] Dysbiosis in the gut flora has been linked with the development of cirrhosis and non-alcoholic fatty liver disease.[61]

Normally-commensal bacteria can be very harmful to the host if they get outside of the intestinal tract.[4][5]Translocation, which occurs when bacteria leave the gut through its mucosal lining, the border between the lumen of the gut and the inside of the body, can occur in a number of different diseases, and can be caused by too much growth of bacteria in the small intestine, reduced immunity of the host, or increased gut lining permeability.[5]

If the gut is perforated, bacteria can invade the body, causing a potentially fatal infection. Aerobic bacteria can make an infection worse by using up all available oxygen and creating an environment favorable to anaerobes.[2]:715

In a similar manner, Helicobacter pylori can cause stomach ulcers by crossing the epithelial lining of the stomach. Here the body produces an immune response. During this response parietal cells are stimulated and release extra hydrochloric acid (HCl+) into the stomach. However, the response does not stimulate the mucus-secreting cells that protect and line the epithelium of the stomach. The extra acid sears holes into the epithelial lining of the stomach, resulting in stomach ulcers.[29]

Inflammatory bowel diseases, Crohn's disease and ulcerative colitis, are all chronic inflammatory disorders of the gut, and asthma and diabetes have been described as inflammatory disorders as well; the causes of these disease are unknown and issues with the gut flora and its relationship with the host have been implicated in these conditions.[7][62][63][64]

Two hypotheses have been posed to explain the rising prevalence of these diseases in the developed world: the hygiene hypothesis, which posits that children in the developed world are not exposed to a wide enough range of pathogens and end up with an overreactive immune system, and the role of the Western pattern diet which lacks whole grains and fiber and has an overabundance of simple sugars.[7] Both hypotheses converge on the changes in the gut flora and its role in modulating the immune system, and as of 2016 this was an active area of research.[7]

Similar hypotheses have been posited for the rise of food and other allergies.[65]

As of 2016 it is not clear if changes to the gut flora cause these auto-immune and inflammatory disorders or are a product of them or adaptation to them.[7][66]

The gut flora has also been implicated in obesity and metabolic syndrome due to the key role it plays in the digestive process; the Western pattern diet appears to drive and maintain changes in the gut flora that in turn change how much energy is derived from food and how that energy is used.[64][67]

Aside from mammals, some insects also possess complex and diverse gut microbiota that play key nutritional roles.[68] Microbial communities associated termites can constitute a majority of the weight of the individuals and perform important roles in the digestion of lignocellulose and nitrogen fixation.[69] These communities are host-specific, and closely related insect species share comparable similarities in gut microbiota composition.[70][71] In cockroaches, gut microbiota have been shown to assemble in a deterministic fashion, irrespective of the inoculum;[72] the reason for this host-specific assembly remains unclear. Bacterial communities associated with insects like termites and cockroaches are determined by a combination of forces, primarily diet, but there is some indication that host phylogeny may also be playing a role in the selection of lineages.[70][71]

For more than 51 years we have known that the administration of low doses of antibacterial agents promotes the growth of farm animals to increase weight gain.[47]

In a study performed on mice by Ilseung Cho,[47] the ratio of Firmicutes and Lachnospiraceae was significantly elevated in animals treated with subtherapeutic doses of different antibiotics. By analyzing the caloric content of faeces and the concentration of small chain fatty acids (SCFAs) in the GI tract, they concluded that the changes in the composition of microbiota lead to an increased capacity to extract calories from otherwise indigestible constituents, and to an increased production of SCFAs. These findings provide evidence that antibiotics perturb not only the composition of the GI microbiome but also its metabolic capabilities, specifically with respect to SCFAs.[47]

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